Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08931 ATGGCAGCAGAAGGTAACTTAGTAGTGCATACTAAGAAGGCCTTTGGTTGGGCAGCTAGAGATCCTACTGGTGTTCTCTCACCTTTCAATTTCTCTAGAAGGGAAACAGGTGAGAAAGATGTAGCGTTCAAGATATTGTATTGTGGAATATGTCACTCTGACCTTCATATGGCCAAAAATGAATGGGGCAATTCCATCTATCCACTAGTTCCTGGGCATGAGCTTGTGGGTGTAGTAACAGAAGTTGGAAGCAAAGTAGAAAAGTTTAAAGTTGGAGACAAAGTTGGTGTGGGCTACATGGTTGATCGTGCCAAAACTGTAATGACGATCTTGAAAACTACTGCCCCAAATTTACTCATTCCTGATAGCTTATCTCTTGATGTTGCTGCACCACTCCTTTGTGCTGGAATCACAGTTTATAGTCCTCTTAGATATTTTGGACTTGACAAGCCTGGTATGAATATAGGTGTTGTTGGTCTTGGTGGACTTGGTCATTTGGCTGTGAAATTCGCCAAAGCTTTCGGTGCTAATGTCACAGTAATTAGTACTTCGCCTAATAAAGAAAAGGAAGCAATTGAACACTTAGGAGCTGAATCATTTCTGTTAAGCCGTAACGTGAATCAAATGAAGGCTGCAATAGGTACTTTGGACGCTATTATTGACACAGTTTCAGCAGACCATCCTCTCTTACCACTGATTGGTTTACTCAAATCTCATGGAAAACTTGTAATAGTTGGTGCAGTAGTGAAGCCTCTAGAGCTTCCTGCTTTCCCTTTACTTGCAGGGAGAAAATTATTAGGCGGGAGTATGATTGGAGGGATAAAGGAGACACAAGAAATGATTGATTTTGCTGCTAAACATGATGTGAAACCTGATATTGAGATTGTTCCAATTGATTATGTCAACACTGCAATGGAGAGACTACTCAAAGCAGATGTGAAATATCGATTCGTGATAGATATTGGCAACACGTTGAAACCAAGCTCTTGA 990 0.4081 MAAEGNLVVHTKKAFGWAARDPTGVLSPFNFSRRETGEKDVAFKILYCGICHSDLHMAKNEWGNSIYPLVPGHELVGVVTEVGSKVEKFKVGDKVGVGYMVDRAKTVMTILKTTAPNLLIPDSLSLDVAAPLLCAGITVYSPLRYFGLDKPGMNIGVVGLGGLGHLAVKFAKAFGANVTVISTSPNKEKEAIEHLGAESFLLSRNVNQMKAAIGTLDAIIDTVSADHPLLPLIGLLKSHGKLVIVGAVVKPLELPAFPLLAGRKLLGGSMIGGIKETQEMIDFAAKHDVKPDIEIVPIDYVNTAMERLLKADVKYRFVIDIGNTLKPSS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08931 329 Pfam Alcohol dehydrogenase GroES-like domain 39 101 IPR013154 -
Vifa1g08931 329 FunFam Putative cinnamyl alcohol dehydrogenase 6 292 321 - -
Vifa1g08931 329 Pfam Zinc-binding dehydrogenase 162 285 IPR013149 -
Vifa1g08931 329 Gene3D - 140 291 - -
Vifa1g08931 329 PANTHER ALDEHYDE REDUCTASE 119 324 IPR047109 GO:0016616
Vifa1g08931 329 Gene3D - 3 139 - -
Vifa1g08931 329 FunFam Cinnamyl alcohol dehydrogenase 135 291 - -
Vifa1g08931 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 290 IPR036291 -
Vifa1g08931 329 SMART PKS_ER_names_mod 24 319 IPR020843 GO:0016491
Vifa1g08931 329 CDD CAD1 15 320 IPR047109 GO:0016616
Vifa1g08931 329 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Vifa1g08931 329 SUPERFAMILY GroES-like 20 152 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08931 Vifa-Chr1 1414727329 1414729008 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08931 9 328 Monolignol Biosynthesis Gene Families AT4G37990 62.606 6.29e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08931 K23232 - gmx:100816901 494.197