Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08927 ATGGCAACAAAAAGTAGAGTGGTTGAACCTGAATTTGAGCATACTAAGAAGGCCTTTGGTTATGCAGCTAGAGATCCTTCTGGTCTTCTCTCACCTTTCAATTTCTCAAGAAGGGAAACAGGTGAGAAAGATGTAGCATTCAAGATATTGTATTGTGGGATATGCCACTCTGATCTTCATATGGCCAGGAGTGAATGGGGCAATTCCATCTATCCACTTGTTCCTGGGCACGAGCTTGTGGGTGTAGTAACAGAGGTTGGAAGCAAAGTAGAAAAGTTTAAAGTTGGAGACAACGTTGGTGTGGGCTACATGGTTGATTCATGCAGATCGTGCAAAAACTGTGATGACGATCTTGAGAATTACTGTCCACAATATACAGTCACGGGTGGTGGAAAATATCGCGATGGTACTGTCACATATGGAGGATACTCCGATTCAATGGTTGCAGACGAACACTTTGTGATTCGCATTCCTGATGGTTTACCTCTTGATGTTGCTGGTCCTCTCCTATGTGCCGGTATCACTGTGTATAGTCCTCTTAGATATTTTGGACTTGACAAGCCTGGAATGAATATAGGTGTTGTTGGTCTTGGTGGACTCGGCCATATGGCTGTTAAATTCGCAAAAGCTTTGGGTGCTAACGTGACAGTAATTAGTACATCGCCTAACAAAGAAAAGGAAGCAATTGAACACTTAGGAGCTGATTCATTTCTGATAAGCCGCGATCCAGATCAGATGCAGGCTGCAATTGATACCTTGGATGGTATTATCGACACAGTTTCAGCGAGTCATCCTATCTTACCACTCGTTAGTATATTGAAATCTCATGGAAAGCTTGTAATGGTTGGTGGAGTTTCAAAGCCACTAGAGCTTCCTGTATCTTCTTTACTTAGAGGGAGAAAGTTAGTAGCTGGAAGTTTAATTGGAGGTATAAAAGAGACGCAAGAAATGATTGATTTTGCAGCAGAACACAATGTAAAGCCTGAGATTGAGATCGTTCCGATTGATTATATCAACACAGCAATGGAGCGTCTTGTTAAAGCAGACGTGAAATATCGATTTGTGATTGATATCGGAAACACACTGAAACCAAGCTCTTGA 1101 0.4196 MATKSRVVEPEFEHTKKAFGYAARDPSGLLSPFNFSRRETGEKDVAFKILYCGICHSDLHMARSEWGNSIYPLVPGHELVGVVTEVGSKVEKFKVGDNVGVGYMVDSCRSCKNCDDDLENYCPQYTVTGGGKYRDGTVTYGGYSDSMVADEHFVIRIPDGLPLDVAGPLLCAGITVYSPLRYFGLDKPGMNIGVVGLGGLGHMAVKFAKALGANVTVISTSPNKEKEAIEHLGADSFLISRDPDQMQAAIDTLDGIIDTVSASHPILPLVSILKSHGKLVMVGGVSKPLELPVSSLLRGRKLVAGSLIGGIKETQEMIDFAAEHNVKPEIEIVPIDYINTAMERLVKADVKYRFVIDIGNTLKPSS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08927 366 SMART PKS_ER_names_mod 28 356 IPR020843 GO:0016491
Vifa1g08927 366 Pfam Zinc-binding dehydrogenase 199 322 IPR013149 -
Vifa1g08927 366 PANTHER ALDEHYDE REDUCTASE 10 361 IPR047109 GO:0016616
Vifa1g08927 366 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Vifa1g08927 366 FunFam Cinnamyl alcohol dehydrogenase 172 328 - -
Vifa1g08927 366 CDD CAD1 19 357 IPR047109 GO:0016616
Vifa1g08927 366 FunFam Uncharacterized protein 21 171 - -
Vifa1g08927 366 FunFam Putative cinnamyl alcohol dehydrogenase 6 329 358 - -
Vifa1g08927 366 Pfam Alcohol dehydrogenase GroES-like domain 43 156 IPR013154 -
Vifa1g08927 366 Gene3D - 172 328 - -
Vifa1g08927 366 SUPERFAMILY GroES-like 24 189 IPR011032 -
Vifa1g08927 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 161 327 IPR036291 -
Vifa1g08927 366 Gene3D - 21 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08927 Vifa-Chr1 1414199898 1414201485 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08927 16 365 Monolignol Biosynthesis Gene Families AT4G37990 69.143 8.54e-168 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08927 K23232 - gmx:100816901 599.356