Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08925 ATGCGGGATATTGAGAAGTTGAGTAACCGAGGATCTACAAAGGCTGGCAACACAAAGGAACATATCAAGTTAAAGGTAGATTCACCGCGATTCAAAAGAAGCAGCACGAAAAGCCAAGGGAAGAATCGCAAACTGAAATCAAAATCTCGTAAACTCAGAGGTTCCACAAATGCGTTGGCGAAAACAGCTATTGATTCTTCCGTCAAGGCGCCAAACAAGAATTCTTCAAATAAAAGATTGATTATTAGACAAAGTCTACATAAAACTGATAGGAATTCAAAACAGGTTCAGCCTAAGATAAATATACAAGGAGGAAATAATTCTCCGAATAATGATAGGGAAAGCGAGAAAGACATTGATCAAGAGACAAATATTCAAAAGCGTAAGAGAAGAAGAAAAAAGAAAAGAGAACGACTTAATGTGGAAATTGATGACACTTCACGCCTTCAGAGAAGAACAAGGAATCTGTTAATCAGAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCCGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCGGAAAAGGAGCTACAAAGAGCAAAGAAGCAGATTATAAAATGCAAGCTTAGTATCCGTGATGCCATTCGCCAGCTTGATTCTCTAAGTTCAGTTGGTAGCATTGAAGGTTCTGTTATTGCTACAGATGGATCGGTTTATCATGAACATATATTCTGTGCAATTTGCAAGATGCGTGAAGCTTTTCCAGATAATGATATTATACTCTGCGACGGCACTTGCAATCGCGCGTTTCACCAAAGGTGTCTTGATCCTCCTTTGGATACTGAAAACATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGACTGAAATACTCGAGGCAACAAATGCGCATCTCGGGACTCGTTTCTCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATTCCCGATGGTGACACGGGATTATTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGATGACTACAATCCAGATATGAAAGAAGACAGCCACGGTGGCAACAACACAGATGGAAATGATGATAATGCATCTGATGATTCGAGTAGTTCTGGTAGTATGTGGTCATTAAATGGAGAATGTTCTCTGTTAGATGAAGGTCTTGAATATTATTCTGTTAGTCATGGCTGCATAGATTCCGATGAATCCGGGGAAATAGCGTGTGGTCGTAGGCAGCGTACAGCTGTTGACTACTTGAAACTTTATGATGAAATGTTTGGGAAGGATGCACAATATGAACAATTGAGTGAAGACGAAGACTGGGGTCCGGTAAAAAGACCGCGAACAGCAAAGGAGTCTGATGCTGTTAATACACTTATGGCTCTGCATGAGATTGAAAACAAACATCAGAATAATGAAAACAAACATCCGAATAATGAGAACAATGGTAGAATACGAGGGAATTCTGCTGGCATAAAAAGACCTTGCTTCAGGATTCCACATGATGCAGTTGAGAAGCTTCGCCAAGCTTTTGCAGAGAATGAGCTTCCTCCAAAATCCGTGAAGGATGCCCTTTCGAAAGAGTTGGGTCTTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACTCGGCACTTAAAACTAGAAAGTATCGAGAAGGAGGAAAACAGCTACAGAGTTTCACTTCTAAGACCTCAAAGGATTGCACATCACAACAGGTGCAGGAAGATGAGATTTTGAAACCAAAGGTCAAGAAAATCACTGTGATTCGTTCCGTGAAGAAGTGTGAAAGTGTTACCGGCAAAGAGAAATCAAAGGCATCTAGCAGTCTTTTGAAGAAAAAGAAACCAGAAATACCTCCACCCTTGAGAGAAAAAAACGGCAACAAGGATTCGATGGAGGAGAATGGCGATGTAAGCTTGATGAAACTATTGAAAGAAAGGAAAAGGAAGGTAAGTTTTGCATTTGAAGGAGACTCTAAGGAAGCAGAGTTGGAGCTTGAAAGACTCACCAAATTGAAGATGAAAGTAGATAGATTGAAGCAAAGATTAACTCAAGTTCAAAATTACAGATCAAAGGGTTCAGAAGATGTAGTTTGTTTGAATGAGCCATCTATTATGTATGTGCCTGTAGCTGAGTTAAGGGAAAAGGTTAAATAG 2175 0.4028 MRDIEKLSNRGSTKAGNTKEHIKLKVDSPRFKRSSTKSQGKNRKLKSKSRKLRGSTNALAKTAIDSSVKAPNKNSSNKRLIIRQSLHKTDRNSKQVQPKINIQGGNNSPNNDRESEKDIDQETNIQKRKRRRKKKRERLNVEIDDTSRLQRRTRNLLIRMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQIIKCKLSIRDAIRQLDSLSSVGSIEGSVIATDGSVYHEHIFCAICKMREAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKTEILEATNAHLGTRFSLDSTWQDVFKEEAAIPDGDTGLLNQEEEWPSDDPEDDDYNPDMKEDSHGGNNTDGNDDNASDDSSSSGSMWSLNGECSLLDEGLEYYSVSHGCIDSDESGEIACGRRQRTAVDYLKLYDEMFGKDAQYEQLSEDEDWGPVKRPRTAKESDAVNTLMALHEIENKHQNNENKHPNNENNGRIRGNSAGIKRPCFRIPHDAVEKLRQAFAENELPPKSVKDALSKELGLDAAKVNKWFKNARYSALKTRKYREGGKQLQSFTSKTSKDCTSQQVQEDEILKPKVKKITVIRSVKKCESVTGKEKSKASSSLLKKKKPEIPPPLREKNGNKDSMEENGDVSLMKLLKERKRKVSFAFEGDSKEAELELERLTKLKMKVDRLKQRLTQVQNYRSKGSEDVVCLNEPSIMYVPVAELREKVK 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08925 724 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 28 723 - -
Vifa1g08925 724 SUPERFAMILY FYVE/PHD zinc finger 228 293 IPR011011 -
Vifa1g08925 724 FunFam pathogenesis-related homeodomain protein 495 559 - -
Vifa1g08925 724 FunFam pathogenesis-related homeodomain protein-like 228 288 - -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 609 641 - -
Vifa1g08925 724 Pfam PHD-finger 236 291 IPR019787 -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 1 137 - -
Vifa1g08925 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 300 IPR013083 -
Vifa1g08925 724 ProSiteProfiles Zinc finger PHD-type profile. 234 291 IPR019787 -
Vifa1g08925 724 CDD PHD_PRHA_like 236 288 IPR045876 -
Vifa1g08925 724 SMART HOX_1 495 557 IPR001356 GO:0003677
Vifa1g08925 724 Gene3D - 495 559 - -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 111 126 - -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 95 110 - -
Vifa1g08925 724 SUPERFAMILY Homeodomain-like 496 557 IPR009057 -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 16 34 - -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 36 51 - -
Vifa1g08925 724 Pfam Homeodomain 504 548 IPR001356 GO:0003677
Vifa1g08925 724 SMART PHD_3 236 289 IPR001965 -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 471 494 - -
Vifa1g08925 724 ProSitePatterns Zinc finger PHD-type signature. 237 288 IPR019786 -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 52 82 - -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 360 376 - -
Vifa1g08925 724 Coils Coil 668 695 - -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 333 347 - -
Vifa1g08925 724 MobiDBLite consensus disorder prediction 322 376 - -
Vifa1g08925 724 CDD homeodomain 496 554 IPR001356 GO:0003677
Vifa1g08925 724 ProSiteProfiles 'Homeobox' domain profile. 493 553 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08925 Vifa-Chr1 1413851886 1413855099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08925 141 555 Homeobox Transcription Factor Family AT4G29940 57.541 1.96e-154 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vifa1g08925 Homeodomain 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08925 - - gmx:100787118 885.174