Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08924 ATGGCAGCAGAAGATAACTTAGTAGTGCATACTAAGAAGGCCTTCGGTTGGGCAGCTAGAGATCCTACTGGTGTTCTCTCACCTTTCAATTTCTCTAGAAGGGAAACAGGTGAGAAAGATGTAGCGTTCAAGATATTGTATTGTGGAATATGTCACTCTGACCTTCATATGACCAAAAATGAATGGGGCAATTCCATCTATCCACTAGTTCCTGGGCATGAGCTTGTGGGTGTAGTAACAGAAGTTGGAAGCAAAGTAGAAAAGTTTAAAGTTGGAGACAACGTTGGTGTGGGCTACATGATTGACTCGTGTCGATCATGCCAAAATTGCAAAGATGATCTTGAAAACTACTGCCCCAAATTTACTGTCACATTTAGTGACAAATATCGTGATGGCACCCTCACATACGGAGGATACTCCGACTCAATGGTTGCAGATGAACACTTTGTTATTCGCATTCCTGATAGCTTATCTCTTGATGTTGCTGCACCACTCCTTTGTGCTGGAATCACAGTTTATAGTCCTCTTAGATATTTTGGACTTGACAAGCCTGGTATGAATATAGGTGTTGTTGGTCTTGGTGGACTTGGTCATTTGGCTGTGAAATTCGCCAAAGCTTTCGGTGCTAATGTCACAGTAATTAGTACTTCGCCTAATAAAGAAAAGGAAGCAATAGAACACCTAGGAGCGGAATCATTTCTGTTAAGCCGTAACGTGAATCAAATGAAGGCTGCAATAGTAGTGAAGCCTCTAGAGCTTCCTGCTTTCCCTTTACTTGCAGGGATAAAGGAGACACAAGAAATGATTGATTTTGCTGCTAAACACGATGTGAAACCTGATATTGAGATTGTTCCGATTGATTATGTCAACACTGCAATGGAGAGACTACTCAAAGCAGATGTCAAATATCGATTCGTGATAGATATTGGCAACACGTTGAAACCAAGCTCTTGA 954 0.414 MAAEDNLVVHTKKAFGWAARDPTGVLSPFNFSRRETGEKDVAFKILYCGICHSDLHMTKNEWGNSIYPLVPGHELVGVVTEVGSKVEKFKVGDNVGVGYMIDSCRSCQNCKDDLENYCPKFTVTFSDKYRDGTLTYGGYSDSMVADEHFVIRIPDSLSLDVAAPLLCAGITVYSPLRYFGLDKPGMNIGVVGLGGLGHLAVKFAKAFGANVTVISTSPNKEKEAIEHLGAESFLLSRNVNQMKAAIVVKPLELPAFPLLAGIKETQEMIDFAAKHDVKPDIEIVPIDYVNTAMERLLKADVKYRFVIDIGNTLKPSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08924 317 SUPERFAMILY GroES-like 20 185 IPR011032 -
Vifa1g08924 317 FunFam Cinnamyl alcohol dehydrogenase 168 250 - -
Vifa1g08924 317 FunFam Putative cinnamyl alcohol dehydrogenase 6 280 309 - -
Vifa1g08924 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 246 IPR036291 -
Vifa1g08924 317 Pfam Alcohol dehydrogenase GroES-like domain 39 152 IPR013154 -
Vifa1g08924 317 PANTHER ALDEHYDE REDUCTASE 248 312 IPR047109 GO:0016616
Vifa1g08924 317 Gene3D - 259 279 - -
Vifa1g08924 317 Gene3D - 168 245 - -
Vifa1g08924 317 Gene3D - 280 309 - -
Vifa1g08924 317 Gene3D - 17 167 - -
Vifa1g08924 317 SMART PKS_ER_names_mod 24 307 IPR020843 GO:0016491
Vifa1g08924 317 FunFam Uncharacterized protein 17 167 - -
Vifa1g08924 317 CDD CAD1 15 308 IPR047109 GO:0016616
Vifa1g08924 317 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 178 235 IPR006140 GO:0051287
Vifa1g08924 317 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08924 Vifa-Chr1 1413715741 1413717431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08924 9 316 Monolignol Biosynthesis Gene Families AT4G37990 60.623 1.67e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08924 K23232 - gmx:100816901 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08924 1 1413715741 1413717431 Vifa1g08924 1 1413715741 1413717431 ECH