Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08923 ATGGCAGCAGAAGATAACTTAGTAGTGCATACTAAGAAGGCCTTCGGTTGGGCAGCTAGAGATCCTACTGGTGTTCTCTCACCTTTCAATTTCTCTAGAAGGGAAACAGGTGAGAAAGATGTAGCGTTCAAGATATTGTATTGTGGAATATGTCACTCTGACCTTCATATGACCAAAAATGAATGGGGCAATTCCATCTATCCACTAGTTCCTGGGCATGAGCTTGTGGGTGTAGTAACAGAAGTTGGAAGCAAAGTAGAAAAGTTTAAAGTTGGAGACAACGTTGGTGTGGGCTACATGATTGACTCGTGTCGATCATGCCAAAATTGCAAAGATGATCTTGAAAACTACTGCCCCAAATTTACTGTCACATTTAGTGACAAATATCGTGATGGCACCCTCACATACGGAGGATACTCCGACTCAATGGTTGCAGATGAACACTTTGTTATTCGCATTCCTGATAGCTTATCTCTTGATGTTGCTGCACCACTCCTTTGTGCTGGAATCACAGTTTATAGTCCTCTTAGATATTTTGGACTTGACAAGCCTGGTATGAATATAGGTGTTGTTGGTCTTGGTGGACTTGGTCATTTGGCTGTGAAATTCGCCAAAGCTTTCGGTGCTAATGTCACAGTAATTAGTACTTCGCCTAATAAAGAAAAGGAAGCAATAGAACACCTAGGAGCGGAATCATTTCTGTTAAGCCGTAACGTGAATCAAATGAAGGCTGCAATAGGTACTTTGGACGGTATTATTGACACAGTTTCAGCAGACCATCCTCTCTTACCACTGATTAGTTTACTCAAATCTCATGGAAAACTTGTAATAGTTGGTGCAGTAGTGAAGCCTCTAGAGCTTCCTGCTTTCCCTTTACTTGCAGGGATAAAGGAGACACAAGAAATGATTGATTTTGCTGCTAAACACGATGTGAAACCTGATATTGAGATTGTTCCGATTGATTATGTCAACACTGCAATGGAGAGACTACTCAAAGCAGATGTCAAATATCGATTCGTGATAGATATTGGCAACACGTTGAAACCAAGCTCTTGA 1056 0.4119 MAAEDNLVVHTKKAFGWAARDPTGVLSPFNFSRRETGEKDVAFKILYCGICHSDLHMTKNEWGNSIYPLVPGHELVGVVTEVGSKVEKFKVGDNVGVGYMIDSCRSCQNCKDDLENYCPKFTVTFSDKYRDGTLTYGGYSDSMVADEHFVIRIPDSLSLDVAAPLLCAGITVYSPLRYFGLDKPGMNIGVVGLGGLGHLAVKFAKAFGANVTVISTSPNKEKEAIEHLGAESFLLSRNVNQMKAAIGTLDGIIDTVSADHPLLPLISLLKSHGKLVIVGAVVKPLELPAFPLLAGIKETQEMIDFAAKHDVKPDIEIVPIDYVNTAMERLLKADVKYRFVIDIGNTLKPSS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08923 351 SUPERFAMILY GroES-like 20 185 IPR011032 -
Vifa1g08923 351 Gene3D - 17 343 - -
Vifa1g08923 351 PANTHER ALDEHYDE REDUCTASE 10 346 IPR047109 GO:0016616
Vifa1g08923 351 FunFam Cinnamyl alcohol dehydrogenase 168 313 - -
Vifa1g08923 351 Pfam Zinc-binding dehydrogenase 195 294 IPR013149 -
Vifa1g08923 351 FunFam Uncharacterized protein 17 167 - -
Vifa1g08923 351 Gene3D - 168 313 - -
Vifa1g08923 351 FunFam Putative cinnamyl alcohol dehydrogenase 6 314 343 - -
Vifa1g08923 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 312 IPR036291 -
Vifa1g08923 351 CDD CAD1 15 342 IPR047109 GO:0016616
Vifa1g08923 351 SMART PKS_ER_names_mod 24 341 IPR020843 GO:0016491
Vifa1g08923 351 Pfam Alcohol dehydrogenase GroES-like domain 39 152 IPR013154 -
Vifa1g08923 351 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08923 Vifa-Chr1 1413715741 1413717431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08923 9 350 Monolignol Biosynthesis Gene Families AT4G37990 67.989 2.72e-160 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08923 K23232 - gmx:100816901 573.163