LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g08920	ATGGTGAAGATAGGTTTTGGTACCTTTGATGACTCTTTTAGCATTGCCTCACTTAAGGCTTATCTATCAGAGTTCATTGCCACTTTGATTTTTGTCTTTGCTGGAGTTGGATCAGCCATTGCTTACAATGAGCTAACATCAGATGCAGCTTTGGATCCAACTGGCCTAGTGGCAGTAGCTGTGGCTCATGCATTTGCACTATTTGTTGGGGTGTCTATAGCAGCCAACATCTCAGTCGCATCTCTTCTTCTCAACTATGTCACCGCTAAGAGTGTTCCAACACATGGTGTTGCTGCTGGATTGAACCCTATTGCAGGACTAGTGTTTGAGATTATAATAACATTTGGATTGGTTTACACGGTTTACGCGACAGCAGCTGACCCAAAAAAGGGTTCAATAGGCACCATTGCACCAATCGCCATTGGGTTTGTTGTGGGTGCCAACATCTTAGTGGCCGGTCCATTCAGTGGCGGGTCAATGAACCCGGCTCGCTCGTTCGGTCCAGCTGTTGTTAATGGAAACTTTGCGGACAACTGGATCTACTGGGCTGGTCCATTGATAGGAGGAGGCTTGGCTGGGTTGATTTATGGTGACATCTTTATTGGTTCATATGCTCCAGCACCAGCAACTGAAACATATCCTTGA	645	0.4605	MVKIGFGTFDDSFSIASLKAYLSEFIATLIFVFAGVGSAIAYNELTSDAALDPTGLVAVAVAHAFALFVGVSIAANISVASLLLNYVTAKSVPTHGVAAGLNPIAGLVFEIIITFGLVYTVYATAADPKKGSIGTIAPIAIGFVVGANILVAGPFSGGSMNPARSFGPAVVNGNFADNWIYWAGPLIGGGLAGLIYGDIFIGSYAPAPATETYP	214

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g08920	214	PRINTS	Major intrinsic protein family signature	109	127	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g08920	214	PRINTS	Major intrinsic protein family signature	179	199	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g08920	214	PRINTS	Major intrinsic protein family signature	19	38	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g08920	214	PRINTS	Major intrinsic protein family signature	142	164	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g08920	214	SUPERFAMILY	Aquaporin-like	14	202	IPR023271	-
	Vifa1g08920	214	Pfam	Major intrinsic protein	80	196	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g08920	214	Gene3D	Glycerol uptake facilitator protein.	81	205	IPR023271	-
	Vifa1g08920	214	Gene3D	Glycerol uptake facilitator protein.	2	80	IPR023271	-
	Vifa1g08920	214	PANTHER	AQUAPORIN-8	5	80	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g08920	Vifa-Chr1	1413138102	1413139220	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g08920	1	211	Major Intrinsic Protein MIP	AT5G47450	65.587	5.54e-104	298

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g08920	K09873		-	gmx:100527333	326.635