Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08918 ATGGCAAACAAGGCCTTCGGTTGGGCAGCTAAAGATACTTCTGGTGTTCTTTCTCCTTTCAGTTTTTCCAGAAGGGAAACAAATGATAAGGATGTGGCATTCAAGGTGCTGTATTGTGGGATATGTCACACAGATCTCCATATGGCAAAAAATGAATGGGGCATGACCTCCTATCCACTTGTTCCTGGGCATGAGATTGTTGGTATTGTGACAAAGGTGGGAAGCAAAGTAGAAAAGTTCAAAGTTGGAGACAAAGTGGGCGTGGGCTTTGTGGTTGATTCATGCCGAGCTTGTGAAAACTGTGAGAAAAACCTTGAGAATTACTGCCCTAAATACACTCCCACAAGTGGTGCAACCTCACCCGGTGGCTACTCCGACTCAATGGTTGCAGACGAGCGCTTCGTGGTTCGTATTCCTGATGAACTACCTCTTGATTCTGCTGCACCTCTCCTTTGTGCTGGTATCACTGTCTATAGTCCTCTTAGATATTACGGACTCGACAAACCTGGGCTGAAAATAGGTGTTGTTGGGCTTGGTGGGCTCGGTCACATGGCTGTGAAATTCGCGAAAGCTTTTGGTGCTAATGTGACTGTAATTAGTACATCTCCTAGCAAGGAAAAGGAAGCATTAGAACACTTGGGAGCTGACTCATTTCTGATAAGTCGAGACCACGAAAAGTTGCAGGCTGCAACGGGTACTTTAGATGGTATCATTGATACAGTTTCGGCTAATCATCCTGTGGTACCACTGATTGGATTACTCAAGTCTCATGGAAAACTCATAATGGTTGGTGCACCCGATAAACCTTTGGAAATCCCTATTTTTCCTTTACTTTTGGGGAGAAAGTTGGTTGGTGGAAGTGCGATTGGAGGGTTGAAGGAAACTCAAGAGATGGTTGATTTTGCTGCTAAACATAATGTGAAACCCGACGTTGAAATTGTTCCTGTGGATTATGTTAACTCCGCATTTGAGCGGCTCCTCAAAGGAGATGTCAAATATCGATTTGTAATTGACATTGGAAACACTTTGAAACCAAGTTCTTAA 1044 0.4397 MANKAFGWAAKDTSGVLSPFSFSRRETNDKDVAFKVLYCGICHTDLHMAKNEWGMTSYPLVPGHEIVGIVTKVGSKVEKFKVGDKVGVGFVVDSCRACENCEKNLENYCPKYTPTSGATSPGGYSDSMVADERFVVRIPDELPLDSAAPLLCAGITVYSPLRYYGLDKPGLKIGVVGLGGLGHMAVKFAKAFGANVTVISTSPSKEKEALEHLGADSFLISRDHEKLQAATGTLDGIIDTVSANHPVVPLIGLLKSHGKLIMVGAPDKPLEIPIFPLLLGRKLVGGSAIGGLKETQEMVDFAAKHNVKPDVEIVPVDYVNSAFERLLKGDVKYRFVIDIGNTLKPSS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08918 347 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 142 308 IPR036291 -
Vifa1g08918 347 Pfam Alcohol dehydrogenase GroES-like domain 30 137 IPR013154 -
Vifa1g08918 347 Gene3D - 153 309 - -
Vifa1g08918 347 FunFam Putative cinnamyl alcohol dehydrogenase 6 310 339 - -
Vifa1g08918 347 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 63 77 IPR002328 GO:0008270|GO:0016491
Vifa1g08918 347 Gene3D - 8 339 - -
Vifa1g08918 347 PANTHER ALDEHYDE REDUCTASE 3 342 IPR047109 GO:0016616
Vifa1g08918 347 Pfam Zinc-binding dehydrogenase 180 303 IPR013149 -
Vifa1g08918 347 FunFam Cinnamyl alcohol dehydrogenase 153 309 - -
Vifa1g08918 347 CDD CAD1 6 338 IPR047109 GO:0016616
Vifa1g08918 347 SMART PKS_ER_names_mod 15 337 IPR020843 GO:0016491
Vifa1g08918 347 FunFam Uncharacterized protein 8 152 - -
Vifa1g08918 347 SUPERFAMILY GroES-like 13 170 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08918 Vifa-Chr1 1412971949 1412973842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08918 1 346 Monolignol Biosynthesis Gene Families AT4G37990 66.477 5.19e-164 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08918 K23232 - gmx:100809071 537.724