Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08914 ATGAAGATGGAACGTTGCATGAATAAAAGAGTTATCTTGTTGTGGTGGTATATAATGGTTTTTCAACTCTGTTTCATTCTTGGTGCTTATTCTGAGAATTTTTCGTTCAGAAGAAACTTGAAGAAATTCGACAACGTGGAATCGTCGAGGGCTAATTCTCCTGTCACTCTTAATAATCAAAATTCTGAACAGGTGGTGATTAGCAATGGAATAATTTCCATCACTTTGTCCAACCCTGAAGGGTATGTCAGAGGATTATCATATGCTGGAATAGACAATGTACTTGATTCAAGAAATGAAGAAAATGATAGAGGGTACTTCGACATTACTTCTGGCAAATTAACTCAAAGAGTTGATGGGACAAATTTCACTGTCATAACACACAAGGAGAATATAGTTGAGGTTTCATTTTTAAGGACATGGAGATCTTCTATGGATGATTCCAATGTACCTATAAACATGGACCAAAGGTATATATTGCGAAGTGGTGATTCAGGGTTTTATTCTTATGTGATATTTGAACGGCCAAAAGGATTCCCTGGCGTTACAATTCATCAAATAAGGACTGTTTATAAACTAAATGAAGCTAGATTCAACTATATGGCCATATCAGATACTAGGCAAAGAAAAATGCCATCTAACAGAGATCGAGAAACAGGACAACAGTTAGCATATCCTGAAGCTGTTCAATTAAGAAATCCATCTAACCCAGAATTTAAAGGAGAGGTGGATGATAAATACCAATACTCAAGTGAAAATCAATACAACCAAGTTAATGGGTGGATTACCGCGGATTCTGAAAAGCCCGTGGGCTTTTGGATCATAACACCGAGCAATGAGTTCCGCAATGGTGGGCCTGTTAAACAAGACCTCACTTCTCATGTTGGCCCAATTTGCCTCTCAATGTTTGTGAGCACCCACTATGCTGGCAAACAGGTAGCAATAGAATTCAAAGAAGGAGAGGATTATAAAAAGGTTTTTGGACCTATTTTTATTTACTTGAATTCTGCTTCAAGTAATGATCAATTCAAATCTCTATGGTCAGATGCTAAACAAAAGCTCTCCAATGAAGTCAAGAACTGGCCTTATGATTTTCCTCAATCAAAAGATTTTATTCCATCTAACCAAAGAGGAACACTACAAGGAAATTTAAAAGTCCAAGACGGCATGAATGCGTCTCAAAATGCTTACAATGCTTACATTGGTCTAGCTCTGCCCGGGCCTGCCGGATCGTGGCAGATAGAAGGCAAGGGATATCAATTTTGGACTCGATCAGACAAAAATGGAAACTTTATTATAAAGAACATTGTACCTGGAGTATACAACTTGTTTGCATGGGTTCCAGGCTTCATTGGAGATTACACGTATAATGATGATATTAAAATTAAACCAGGATCTACCATCAATTTGAATTCACTTATATATAATCCTCCAAGAAATGGCCCAACTCTATGGGAAATCGGCATTCCAGATCGATCGGCTGCTGAATTTTTTGTACCAAACCCTTACCCTAACCTCATCAACAAGTTATATATTAACAAACCGATGGACAAGTTTAGAAATTATGGATTATGGAATCGCTACACCGATTTATATCCAGAAAACGATCTTGTTTATAGAATTGGCATTAGTAACTATCAAAAGGATTGGTTTTTTGCTCATGTTCCAAGAATCATAGGAAATAAAACTTATCAAGCAACCACGTGGAACGTTACATTTAAACTTAGTAATGTATTAAACGGAAACTACACATTACAACTGGCCCTAGCAAGTGCCTCTTATGGTGAAGTACAGGTTTGGTTCAATAACATGAGTGATGATCCTCCCTACTTCACAACAAATAGAATAGGAGGTGACAGTGTCATACCAAGACATGGAATCCATGGGTTATATTGGTTATTTAGTATACAAGTACCAAGAGTTCATTTGGTGAAAGGAGATAACACATTACATTTGAGACAATCAAGATCTGGATCAACTTTTGAAGGGGTTTTATATGATTATATCCGCTTAGAAAGTCCTCCAACTACCAAGTTGAATTTGTGA 2046 0.3705 MKMERCMNKRVILLWWYIMVFQLCFILGAYSENFSFRRNLKKFDNVESSRANSPVTLNNQNSEQVVISNGIISITLSNPEGYVRGLSYAGIDNVLDSRNEENDRGYFDITSGKLTQRVDGTNFTVITHKENIVEVSFLRTWRSSMDDSNVPINMDQRYILRSGDSGFYSYVIFERPKGFPGVTIHQIRTVYKLNEARFNYMAISDTRQRKMPSNRDRETGQQLAYPEAVQLRNPSNPEFKGEVDDKYQYSSENQYNQVNGWITADSEKPVGFWIITPSNEFRNGGPVKQDLTSHVGPICLSMFVSTHYAGKQVAIEFKEGEDYKKVFGPIFIYLNSASSNDQFKSLWSDAKQKLSNEVKNWPYDFPQSKDFIPSNQRGTLQGNLKVQDGMNASQNAYNAYIGLALPGPAGSWQIEGKGYQFWTRSDKNGNFIIKNIVPGVYNLFAWVPGFIGDYTYNDDIKIKPGSTINLNSLIYNPPRNGPTLWEIGIPDRSAAEFFVPNPYPNLINKLYINKPMDKFRNYGLWNRYTDLYPENDLVYRIGISNYQKDWFFAHVPRIIGNKTYQATTWNVTFKLSNVLNGNYTLQLALASASYGEVQVWFNNMSDDPPYFTTNRIGGDSVIPRHGIHGLYWLFSIQVPRVHLVKGDNTLHLRQSRSGSTFEGVLYDYIRLESPPTTKLNL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08914 681 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 675 - -
Vifa1g08914 681 Gene3D - 481 672 - -
Vifa1g08914 681 Pfam Polysaccharide lyase family 4, domain III 483 671 IPR029411 -
Vifa1g08914 681 CDD RGL4_M 376 473 IPR029413 -
Vifa1g08914 681 SUPERFAMILY Galactose-binding domain-like 480 672 IPR008979 -
Vifa1g08914 681 SUPERFAMILY Galactose mutarotase-like 60 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vifa1g08914 681 CDD RGL4_C 485 672 - -
Vifa1g08914 681 Pfam Polysaccharide lyase family 4, domain II 398 470 IPR029413 -
Vifa1g08914 681 CDD RGL4_N 61 342 - -
Vifa1g08914 681 Pfam Rhamnogalacturonate lyase family 48 243 IPR010325 -
Vifa1g08914 681 Gene3D - 372 472 - -
Vifa1g08914 681 Gene3D - 56 350 IPR014718 GO:0030246
Vifa1g08914 681 SUPERFAMILY Starch-binding domain-like 373 472 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08914 Vifa-Chr1 1412125745 1412129679 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08914 64 674 Polysaccharide Lyase AT1G09890 52.648 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08914 K18195 - gmx:100776664 878.626