Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08908 ATGGAATCAAACGGAAAAGAGGTTTCTAGCGAAGATGACGCATCACCAAGAGCCGTACTAGACACCCCTGTTTCGGGGACAGAGTCAGACAACAGTGGAAGCAGCCATAGCAGTTTTGACTCTTATTCGCCGGAGAAGTCGCCTTCGCCACCGCCAATAGGAAAATCGGGTGGTGGAAAAGAAAGTCAGGTGCAGCAATGGAAAACAATGGTGGATGTTTTTATGTTTAGGTCGGTGAGAAAACTATCGGCGATTCCTATTTTTACTGCGGCTACACACGAAATAACTAGGAAAGGTTTGACTAAGAAATTGGCTCGAATTCGAAGTGCTGAAGAGAGTCTTGATATTGATGCTATTCCTACCAAACCTTCTTGGAGAAACTTTGATTATGCAGAACTTGCTGCTGCCACTAATGATTTCAATTCTGAGAACTTGGTTGGAAAAGGTGGTCATGCTGAAGTATACAAAGGACAATTATCAGATGGTCAAGTTGTAGCAATTAAGAGACTAATGAAGAACGACAAGGATTTCCCCGACAGAGCAGGCGATTTCTTGACTGAGCTTGGAATCATCGCGCACATAAACCACCCGAATGCTACACACCTTATTGGGTTTGGTATCCAAAAAGGCCTCTACTTTGTCCTACAGTTAGCACCATATGGAAGCCTTTCTTCTTTGCTCTTCGGTTCTGAATGCATGGAGTGGAAGTCAAGGTACAAGGTAGCTATCGGAGTAGCCGAGGGATTGCATTATCTTCATAAAGATTGTCCGAGACGAATCATTCACAGGGACATCAAAGCCTCCAACATATTACTCAATGATAATTATGAAGCTGAGATATCAGATTTTGGACTTGCAAAATGGCTTCCAAATAATTGGGCACACCATGTTGTTTTTCCTATAGAAGGAACATTTGGATATTTGGCTCCGGAGTACTTTATGCATGGTATTGTGGATGAGAAGACTGACGTGTTTGCGTTCGGCGTTTTGCTACTCGAGCTTATAACAGGTCGTCGCGCAGTTGATTCAGATAGTAGACAAAGTCTTGTGATTTGGGCCAAGCCACTACTTGATTCAAACAATGTCAAGGAGCTTATAGATCCCAGATTAGAAGAGAATTATGATCCTATTGAAATGAAGCGTACCATGGTGACGGCTTCCTTGTGCGTTCACCATTCAACCTCCAAACGTCCGTTCATGAAACTGGCTACACGGCTATTAAAGGGCGAGGAAACAATTTTAGATTCCAAGCAAAACTCAGGTTCCTCAAAATCACTCATGTTAGAGGCATGCGACTTAGAAGATTACACTTGTTCAAATTACTTGAAGGACCTAAACCGCCATAGGGAACTAATCATGGAGTGA 1365 0.4293 MESNGKEVSSEDDASPRAVLDTPVSGTESDNSGSSHSSFDSYSPEKSPSPPPIGKSGGGKESQVQQWKTMVDVFMFRSVRKLSAIPIFTAATHEITRKGLTKKLARIRSAEESLDIDAIPTKPSWRNFDYAELAAATNDFNSENLVGKGGHAEVYKGQLSDGQVVAIKRLMKNDKDFPDRAGDFLTELGIIAHINHPNATHLIGFGIQKGLYFVLQLAPYGSLSSLLFGSECMEWKSRYKVAIGVAEGLHYLHKDCPRRIIHRDIKASNILLNDNYEAEISDFGLAKWLPNNWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSDSRQSLVIWAKPLLDSNNVKELIDPRLEENYDPIEMKRTMVTASLCVHHSTSKRPFMKLATRLLKGEETILDSKQNSGSSKSLMLEACDLEDYTCSNYLKDLNRHRELIME 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08908 454 SMART serkin_6 140 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08908 454 Pfam Protein kinase domain 141 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08908 454 Gene3D Phosphorylase Kinase; domain 1 100 215 - -
Vifa1g08908 454 MobiDBLite consensus disorder prediction 1 64 - -
Vifa1g08908 454 Gene3D Transferase(Phosphotransferase) domain 1 219 428 - -
Vifa1g08908 454 PANTHER OS08G0249100 PROTEIN 7 427 IPR046958 -
Vifa1g08908 454 ProSiteProfiles Protein kinase domain profile. 140 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08908 454 SUPERFAMILY Protein kinase-like (PK-like) 121 404 IPR011009 -
Vifa1g08908 454 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 117 217 - -
Vifa1g08908 454 MobiDBLite consensus disorder prediction 22 44 - -
Vifa1g08908 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vifa1g08908 454 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 219 421 - -
Vifa1g08908 454 ProSitePatterns Protein kinases ATP-binding region signature. 146 168 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08908 Vifa-Chr1 1410341822 1410344204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08908 113 437 Trihelix Transcription Factor Family AT5G38560 40.571 2.73e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa1g08908 Pkinase 2.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08908 - - gmx:100818314 665.611