Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08900 ATGGAGAATATTGATCAAGAGTACAAACATTACTGGGAGACCAACATGTTTCTCCAAACCCAAGAGCTTGATAGCTGGGGATTGGATGAAGCATTTTCAAGTTACTATGATTCAAGCTCTCCAGATGGTGCAGCTTCATCTAAGAATATTGTTTCTGAAAGAAATAGAAGAAATAAACTCAATGAAAGACTCTTTGCACTTAGAGCAGTGGTCCCTAATATTAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCAATCGAGTATATACAGCACTTGCATGAACAAGAGAAGAACATTGAGGCTGAGATAATGGAACTTGAATCTGGGATGCCAAATAGTATTAATCAAAATTATGATTTTGATCAAGAACTTCCTGTGTTGCTAAGGTCGAAGAAGAAGAGAACAGATCAATTGTATGATTCTATCAGTTCAACAAACTCTCCAATTGAACTTCTTGAGCTTAGGGTAACATACATGGGAGAAAATACAGTAGTTGTGAGCATGACATGTAGCAAAAGGACAGACACAATGGTTAAACTGTGTGAAGTGTTTGAATCTTTGAACCTTAAAATTATCACTGCCAATATCACTTGTTTTTCTGGCACACTTTTGAAGACAGTCTTCATTCAGGCCAATGAAGAAGATAAAGATTTATTGCAGCTACAGATCCAAACAGCCATTGCAGCTCTTAATGATCCTCAAAGTCCTATGAGCATCTAA 723 0.3679 MENIDQEYKHYWETNMFLQTQELDSWGLDEAFSSYYDSSSPDGAASSKNIVSERNRRNKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKNIEAEIMELESGMPNSINQNYDFDQELPVLLRSKKKRTDQLYDSISSTNSPIELLELRVTYMGENTVVVSMTCSKRTDTMVKLCEVFESLNLKIITANITCFSGTLLKTVFIQANEEDKDLLQLQIQTAIAALNDPQSPMSI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08900 240 Gene3D - 41 109 IPR036638 GO:0046983
Vifa1g08900 240 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 42 111 - -
Vifa1g08900 240 Pfam Helix-loop-helix DNA-binding domain 51 94 IPR011598 GO:0046983
Vifa1g08900 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Vifa1g08900 240 Coils Coil 90 110 - -
Vifa1g08900 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 44 226 - -
Vifa1g08900 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 110 IPR036638 GO:0046983
Vifa1g08900 240 SMART finulus 50 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08900 Vifa-Chr1 1409208509 1409210797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08900 1 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 66.359 7.28e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g08900 HLH 3.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08900 - - gmx:100817978 382.874