Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08898 ATGGAGAATATTGATCAAGAGTACAAACATTACTGGGAGACCAACATGTTTCTCCAAACCCAAGAGCTTGATAGTTGCAGCTGGGGATTGGATGAAGCATTTTCAGGTTACTATGATTCAAGCTCTCCAGATGGTGCAGCTTCATCTAAGAACATTGTTTCTGAAAGAAATAGGAGGAAGAAACTCAATGAAAGACTCTTTGCACTTAGAGCAGTGGTCCCTAATATTAGCAAGATGGATAAGGCTTCAATAGTTAAGGATGCAATTGAGTACATAGAGCACTTGCAAGAACAACAGAAGAACATTGAAGCTGAGATAATGGAACTTGAATCTGGAATGCCAAATAGTATTAATCAAAATTATGATTTTGATCAAGAACTTCCTGTGTTGCTAAGGTCGAAGAAGAAGAGAACAGATCAATTGTATGATTCTATCAGTTCAACAAACTCTCCAATTGAACTTCTTGAGCTTAGGGTAACATACATGGGAGAAAATACAGTAGTTGTGAGCATGACATGTAGCAAAAGGACAGACACAATGGTTAAACTGTGTGAAGTGTTTGAATCTTTGAACCTTAAAATTATCACTGCCAATATCACTTGTTTTTCTGGCACACTTTTGAAGACAGTCTTCATTCAGGCCAATGAAGAAGATAAAGATCTATTGCAGCTACAGATCCAAACAGCCATTGCAGCTCTTAATGATCCTCCAAGTCCTATGAGCATTTAA 729 0.3759 MENIDQEYKHYWETNMFLQTQELDSCSWGLDEAFSGYYDSSSPDGAASSKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIVKDAIEYIEHLQEQQKNIEAEIMELESGMPNSINQNYDFDQELPVLLRSKKKRTDQLYDSISSTNSPIELLELRVTYMGENTVVVSMTCSKRTDTMVKLCEVFESLNLKIITANITCFSGTLLKTVFIQANEEDKDLLQLQIQTAIAALNDPPSPMSI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08898 242 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 113 - -
Vifa1g08898 242 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 228 - -
Vifa1g08898 242 Gene3D - 44 111 IPR036638 GO:0046983
Vifa1g08898 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vifa1g08898 242 Coils Coil 85 112 - -
Vifa1g08898 242 SMART finulus 52 101 IPR011598 GO:0046983
Vifa1g08898 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 112 IPR036638 GO:0046983
Vifa1g08898 242 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08898 Vifa-Chr1 1409190970 1409194928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08898 1 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.899 1.93e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g08898 HLH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08898 - - gmx:100817978 382.104