Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08897 ATGGAGAATATTGATCAAGAGTACAAACATTACTGGGAGACCAACATGTTTCTCCAAACCCAAGAGCTTGATAGTAGTTGCAGCTGGGGATTGGATGAAGCATTTTCAGGTTACTATGATTCAAGCTCTCCAGATGGTGCAGCTTCATCTAAGAACATTGTTTCTGAAAGAAATAGGAGGAAGAAACTCAATGAAAGACTCTTTGCACTTAGAGCAGTGGTCCCTAATATTAGCAAGATGGATAAGGCTTCAATAGTTAAGGATGCAATTGAGTACATAGAGCACTTGCAAGAACAACAGAAGAACATTGAAGCTGAGATAATGGAACTTGAATCTGGAATGCCAAATAGTATTAATCAAAATTATGATTTTGATCAAGAACTTCCTGTGTTGCTAAGGTCGAAGAAGAAGAGAACAGATCAATTGTATGATTCTATCAGTTCAACAAACTCTCCAATTGAACTTCTTGAGCTTAGGGTAACATACATGGGAGAAAATACAGTAGTTGTGAGCATGACATGTAGCAAAAGGACAGACACAATGGTTAAACTGTGTGAAGTGTTTGAATCTTTGAACCTTAAAATTATCACTGCCAATATCACTTGTTTTTCTGGCACACTTTTGAAGACAGTCTTCATTCAGGCCAATGAAGAAGATAAAGATCTATTGCAGCTACAGATCCAAACAGCCATTGCAGCTCTTAATGATCCTCCAAGTCCTATGAGCATTTAA 732 0.3757 MENIDQEYKHYWETNMFLQTQELDSSCSWGLDEAFSGYYDSSSPDGAASSKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIVKDAIEYIEHLQEQQKNIEAEIMELESGMPNSINQNYDFDQELPVLLRSKKKRTDQLYDSISSTNSPIELLELRVTYMGENTVVVSMTCSKRTDTMVKLCEVFESLNLKIITANITCFSGTLLKTVFIQANEEDKDLLQLQIQTAIAALNDPPSPMSI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08897 243 SMART finulus 53 102 IPR011598 GO:0046983
Vifa1g08897 243 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Vifa1g08897 243 Coils Coil 86 113 - -
Vifa1g08897 243 Gene3D - 45 112 IPR036638 GO:0046983
Vifa1g08897 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 229 - -
Vifa1g08897 243 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Vifa1g08897 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Vifa1g08897 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08897 Vifa-Chr1 1409190970 1409194928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08897 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.596 5.50e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g08897 HLH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08897 - - gmx:100817978 381.719