Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08895 ATGACAGAGCAAACAAAGTTCAGCGTATTATGCAGTCTCCTAACATGGACGCAACGAACAAAATCACCGCAGAAGAAACGCGCCAAGTTCCGCAAGTTTCTCGACTCTTTCTGCCCCGATCGGAACTACTTCCCCGCTATTCGCCTCATTCTTCCCAACCTTGATCGTGAACGCGGCTCTTACGGTCTCAAAGAGTCCGTTCTCGCTACTTCGCTCATTGACGCTCTTGGAATGTCTAAAGACTCGCCCGATGCTCTGAGACTTATCAATTGGCGGAAAGGTGGTTCCAAAACTGGTGCTAATGCCGGTAATTTCGCACTTGTCGCCACCGAGGTGCTGCAGCTTAGACAAGGTACTGCCTCGGGTGGATTGACTATAAAGGAGTTAAATGACTTGCTTGATCAATTGTCTTCAAGTGAAAACAGGGGTGAGAAGACTTTGGTTCTTTCAACCCTTATCCAAATGACAAACGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATTTGAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAAAAACTAAGGGATCGGAACCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAATTAGCTAAGAGAGTTGCTAACGCAGCTGAAGCATGGAAGAAGCTTCATGGTAAGGAAGTGGTTGCTGAATGCAAATTTGATGGTGATCGCATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACATGCGATGTCAGAAATCATAATACAAAATATTCTTGTAGATAGATGCATACTTGATGGTGAAATGTTGGTCTGGGATACATCCTTGAATCGTTTTGCTGAGTTTGGCTCTAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTAGATAGTAATAGACAGTTATGCTACATTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTGAAGGAGCGGCATGCGATTCTACGTAAAGTTGTGAGGCCATTGAATGGTCGTTTGGAAATTTTACTACCTAATAATGGTGGTATCAACAGTCATCGGCCTTCTGGTGAACCATGTTGGTCGCTTATTGCTCAAAATGCTGATGAAGTTGAAAGATTTTTCAAAGAAACCATTGAAAATAGAGACGAAGGAATTGTAGTAAAAGACCTCAGCTCCAAATGGGAACCCAGTGATCGCAGTGGGAAATGGCTGAAATTGAAGCCTGAATACGTTCAAGCTGGTTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGTTCCGGACGACATGGGGGAGAGGTTGCTCAATTCTTGGTGGGCCTTGCAGAGCGTCCATCCCCAAATACACATCCCAAGCGATTTGTCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGAAGCAGTAGTAACCAAACTGAAACCTTACTTCAGAAAGTATGAGTATCCAAAGCAGAGGCCACCAAGTTTTTATCAAGTTACTAATCATTCCAAAGAAAGACCTGATGTGTGGGTCGATAGCCCTGAAAAATCAATTATTCTGTCTATAACAAGTGATATCCGAACCATAGAATCTGAGGTATTCTCTGCACCTTACTGTCTGAGATTTCCTCGGATTGATCGGGTGAGATATGACAAGGCTTGGCATGAATGCCTTGATGTACAATCATTTATAGAATTGGTGCAATCTAGCAATGGTACCACACAGAGGGATACGGAATATGGGAACAAGAAGGGCAGTAAACAAAAACACATGAAAGCCTCTATAAAGGGAGAAAAGAAAAATGTGCTCATTGTTCCTTCTCATTTAAGTCAAACTGATGTTTCGAGTGTAAAGGGAGGTTCCTTATTATTTTCAAATATGATGTTCTATTTTGTCAATGTCCCTCCATCTCATTCTCTTGAGTTCTTCCACAAATTAGTTGCTGAGAATGGCGGTACTTTCTCAATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAAGCAGCAAAACGTCGTGGTGATATCATTCATTATACCTGGGTACTAGATTGCTATGCACAAAAGAAACTCATCCGCTTACAGCCAAAATACTTCCTTTTCCTATCTGAAGAGACCAAGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCAGACTCTTACTACTTGGATCTCAATCTTGGAGACATCAAACAGCTCTTAGACAATATTAATAGGTCAGAAAATGTCAGCACTGTCAATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTGTCTTCAATGGATGCTCCATTTATTTCCGCAACACAATGCCATCTCTGAAAGAAGATTGGCAATATTTATTGGAACTTTCTTCGAAGAGACTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAATTCACCTCTAATCTCAATTTTGCAACTCATGTTGTGGCCTTGTTCATACCAAGTTATCTTACCAACTATGAAGAAGAAATACAGAAGAGTTTCACTTCAGTTGAGAGAAAACTTCTCCGAAGCAAGAGGTTGCATGTAGTAAATTCCAAGTGGTTAGAAGATTGTTTGAACAGTTGCCAAAGATTATCAGAAGACTCTTATAGGTTGAAGTCCGATGGAATAGAAGAGTCAACTGCTGAGGATTGCGAACATGACATGGCGGTGGATGCTCACCTAGTTGAAGATAATGTAGAAAGCCAAAATGAATCTTTACCTAACAAGCAAAGTAAACAGAGTAGTGCAAAAGCTGTTTCTCAAGACAGTTTGGCTTTGGCATCACAAGGGACGCGTGGTCAAAGGAAACGAGGAAGACCTGCTGTAGGCAGAGATGAAAGTGATTCTCTTGAGAAAAGACCATACGAGCAAGAGGCTGACATTACAGAAGGAAGTTCTGGTTTTCACATCGAGCAATTAGAACCACATGAGACTAAGAAAATTCTCAACGTCCAAGGTACTGAAGGAGTAGAAATTTCTGAACACAACAAGGGAAGCGAGCTTGAGGATTTCAACAACCAACATGGAAATATGTTGGCGGCTGAAATTGGAATGGGTGATGTGCGCAACGAGCAAAGTAATCAGGTTAGTGAGAAACTTGAAATTATGACTGATCCTGTGCAGGCAATGTTACTTGACATGATTCCTAGCCTTGCTACGAATAAAGTTGAGCAACCTACTAATCGTTGTGTTGAAGAAGAGAAGGGACCGGAAACCTCCAACAAAGCGCCTTCGGCTTCAAAGAAAAAGAAAGTTAGTTTCAAGGCTATGGCTGCTAACCTCCTCAAGGATTGGTAA 3417 0.4115 MTEQTKFSVLCSLLTWTQRTKSPQKKRAKFRKFLDSFCPDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMSKDSPDALRLINWRKGGSKTGANAGNFALVATEVLQLRQGTASGGLTIKELNDLLDQLSSSENRGEKTLVLSTLIQMTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIIQNILVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSNRQLCYIAFDILYFGDTSVIHQTLKERHAILRKVVRPLNGRLEILLPNNGGINSHRPSGEPCWSLIAQNADEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYVQAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLAERPSPNTHPKRFVSFCRVGTGLSDDELEAVVTKLKPYFRKYEYPKQRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFSAPYCLRFPRIDRVRYDKAWHECLDVQSFIELVQSSNGTTQRDTEYGNKKGSKQKHMKASIKGEKKNVLIVPSHLSQTDVSSVKGGSLLFSNMMFYFVNVPPSHSLEFFHKLVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDIIHYTWVLDCYAQKKLIRLQPKYFLFLSEETKKKLQEEIDEFSDSYYLDLNLGDIKQLLDNINRSENVSTVNHYRKKYCPKDKWSVFNGCSIYFRNTMPSLKEDWQYLLELSSKRLKLEVLMGGGKFTSNLNFATHVVALFIPSYLTNYEEEIQKSFTSVERKLLRSKRLHVVNSKWLEDCLNSCQRLSEDSYRLKSDGIEESTAEDCEHDMAVDAHLVEDNVESQNESLPNKQSKQSSAKAVSQDSLALASQGTRGQRKRGRPAVGRDESDSLEKRPYEQEADITEGSSGFHIEQLEPHETKKILNVQGTEGVEISEHNKGSELEDFNNQHGNMLAAEIGMGDVRNEQSNQVSEKLEIMTDPVQAMLLDMIPSLATNKVEQPTNRCVEEEKGPETSNKAPSASKKKKVSFKAMAANLLKDW 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08895 1138 Pfam BRCT domain, a BRCA1 C-terminus domain 654 737 IPR001357 -
Vifa1g08895 1138 FunFam DNA ligase 1 218 - -
Vifa1g08895 1138 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Vifa1g08895 1138 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa1g08895 1138 CDD Adenylation_DNA_ligase_IV 214 447 IPR044125 GO:0005524
Vifa1g08895 1138 MobiDBLite consensus disorder prediction 1096 1124 - -
Vifa1g08895 1138 SUPERFAMILY BRCT domain 792 912 IPR036420 -
Vifa1g08895 1138 Pfam ATP dependent DNA ligase C terminal region 467 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vifa1g08895 1138 FunFam DNA ligase 445 606 - -
Vifa1g08895 1138 Gene3D DNA ligase/mRNA capping enzyme 220 444 - -
Vifa1g08895 1138 MobiDBLite consensus disorder prediction 939 970 - -
Vifa1g08895 1138 Gene3D BRCT domain 798 910 IPR036420 -
Vifa1g08895 1138 SUPERFAMILY BRCT domain 656 741 IPR036420 -
Vifa1g08895 1138 Gene3D - 445 606 IPR012340 -
Vifa1g08895 1138 PANTHER DNA LIGASE 4 3 1130 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Vifa1g08895 1138 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa1g08895 1138 SUPERFAMILY Nucleic acid-binding proteins 450 601 IPR012340 -
Vifa1g08895 1138 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Vifa1g08895 1138 Gene3D BRCT domain 668 780 IPR036420 -
Vifa1g08895 1138 MobiDBLite consensus disorder prediction 978 999 - -
Vifa1g08895 1138 CDD BRCT_DNA_ligase_IV_rpt1 656 742 - -
Vifa1g08895 1138 FunFam DNA ligase 667 781 - -
Vifa1g08895 1138 ProSiteProfiles BRCT domain profile. 798 911 IPR001357 -
Vifa1g08895 1138 NCBIfam ATP-dependent DNA ligase 61 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vifa1g08895 1138 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vifa1g08895 1138 SMART BRCT_7 654 730 IPR001357 -
Vifa1g08895 1138 SMART BRCT_7 800 901 IPR001357 -
Vifa1g08895 1138 FunFam DNA ligase 220 444 - -
Vifa1g08895 1138 MobiDBLite consensus disorder prediction 938 1017 - -
Vifa1g08895 1138 Pfam ATP dependent DNA ligase domain 226 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vifa1g08895 1138 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 443 - -
Vifa1g08895 1138 ProSiteProfiles BRCT domain profile. 652 740 IPR001357 -
Vifa1g08895 1138 CDD OBF_DNA_ligase_IV 449 593 - -
Vifa1g08895 1138 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08895 214 602 Core DNA Replication Machinery Family AT1G08130 27.901 5.66e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08895 K10777 - gmx:100816002 1790.01