Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08883 ATGGAACTCACTCATTTTCCGGACGACCCACAAACCCTAATTTCACCACACCAAGATTCAATAATGGAAGAAGATGATGATTCCTCCTCCTTGTTCGATTCAATGCTTTGTGATTCAACTTCCAAACTCATTCCTTCTGGATTCACCAGATCTGAAAACCAAGCAGATGAGTGTGTTATGTTTGTAAATGCGGGAGGGGATGCTTTTAATGAAGCAGCTGATGGAGTTATGTTTCTGGGTGATACCTTTTTTGATGGTGGGGATGTTTTCCGCACCAACGAGCAAATAGCGGAAGGCGGAGATTATCCGTCTTTATATCAGTCAGCTCGGGTGGGAAGTTTTTGTTATAGGATTGAGAATCTTCCTCCTGGACACTATCTTGTTGACCTTCATTTTGTTGAAATCATTAATGTAAATGGGCCAAAAGGAATGAGGGTGTTCAATGTATACATTCAAGAGGAAAAGGTTCTATTCGAATTGGATATATATGCAGTTGTTGGAGTCAACAAGCCACTGCAATTGATAGATTCTAGGGCCATTGTAAAGGATGATGGGGTAATTCTCATAAGATTTGAAAGTTTAAATGGAAGCCCAGTTGTTAGTGGGATTTGCATTAGGAGAGCGTCAGTTCCACCAGTGACAAATGATTTCATTCAATGTAACTACTGTGATGCGCAGATTGAAATCTCTTCATATCAGATGAAAGTATTGCAGACAAAATCTACAGCAAAGTATGAGAATAAGATAAAGGAGCTCACAATGCAGTGTGAGCTCAAAGCAAAGGAATGCTATGAGGCGTGGACGTCATTAACTGAAACAAGTAGGAAAGTGGAAGAAGTCCAGACAGAGCTTGACCAAGTGACATTTATGTCACTCACTACTGAACAAACTGTGGAGAAACAAGCTGAGAACCTGAGGAGTATTTCTCTCAGGTATGAACTTGATAAGAAGAAATGGGCAGAAGCTATTACCAGTTTAGATGAAAAAATAAAGTTGATGAAGAGTGATCAGGCTCAGCTTTCCCTTGAAGCACATGATTGTGTCGATTCAATCCCTGAATTAAATAAGATGGTTTTTGCAGTTCAAGAATTGGTTAAGCAGTGTGAAGATCTCAAAGTGATGTATTATGAAGAGATGACAAAGAGAAAGAAGCTATTCAATGAAGTTCAAGAGGCTAAAGGGAACATTAGGGTTTTCTGCCGTTGTCGACCATTGAATAAGGTTGAAATGTCAGCTGGATGTACGACAGTTGTGGATTTTGATGCAGCAAAGGATGGGTGCCTTGGAATTTTGACAACTAGTGGCTCCACCAAAAAATCATTCAGATTTGACAGGGTTTATACACCAAAAGATGATCAAGTTGATGTATTTGCTGATGCATCATCAATGGTAATCTCTGTGCTGGATGGCTACAATGTTTGCATATTTGCTTACGGACAAACAGGAACAGGAAAAACGTTTACTATGGAAGGAGTAGAGCAGAATAGAGGAGTCAATTACAGGACTCTTGAGCATTTGTTTAAAGTTAGTAAGGAAAGGAGTGAAACATTTTCATATGACATAGCTGTTAGTGTGCTTGAGGTTTATAATGAACAAATCAGAGACCTATTGGCTACGGGACCAGCATCAAAAAGATTGGAGATAAAACAAAGTCCTGAAGGATATCATCATGTCCCTGGTGTTGTAGAAGCCAAGGTTGACAACATATGTGATGTGTGGAACGTACTGCAGACTGGGAGTAATGCTAGAGCAGTTGGAAGTAATAATGTTAACGAGCATAGTAGTCGATCTCATTGCATGCTATGTATAATGGTAAAGGCTAAAAATTTGATGAATGGCGAGTGTACCAAGAGCAAGCTCTGGCTTGTGGATTTGGCAGGTAGTGAGAGACTTGCAAAGACTGATGTGCAAGGGGAGCGACTTAAGGAAGCACAGAATATTAATCGATCTCTTTCCGCTCTTGGAGATGTGATATCCTCTTTAGCTGCAAAAAGTAGTCACATTCCGTATAGGAACTCTAAATTGACACATTTACTCCAAGACTCACTAGGAGGTGACTCAAAAACTTTGATGTTTGTACAAATAAGTCCATCAGATCAAGACGTAGGTGAGACTCTGAGCTCGCTTAATTTTGCAACTAGAGTGAGAGGTGTTGAGTTAGGTCCTGTTAAGAAGCAAATTGACTCAAGTGAACTTCAAAAGACAAAAGCACTGCTTGACAAAGCACGAAGTGAGTGCAGAAGTAAAGATGAATCTATGAAAAAACTAGAAGAGAGTTTGCAAACCATTGAAAGTAAGGCCAAAGGAAAAGATAATATCCACAGAAGTCTACAAGAAAAGATTAAAGAACTTGAAGGCCAGATTGAGCTCAAAACATCTATGCAAAACCAATCAGAGAAACAAATTTCTCAGTTATGTGAAAAGTTGAAGGGAAAAGAAGAAACCTGCTGTACACTCCAGCATAAGGTCAAAGAGCTAGAGAAAAAAATAAAAGAACAGCTTCAGACGGAGACAGCCAATTTCCAACAGAAGGTTTGGGATCTAGAAAAGAAGCTGAAAGATCAGTTTCAAGGGTCTGAGTCTGAATCTTCCTTTCTAAAAGATAAGATCATGGAGCTTGAGAGAAAACTGAAAGAGCAGGAGCAGAACTCAGAGTCCATGCTTAAACAACAGATCATGGAGCTTGAGAGAAAACTGAAAGAGCAGGAGCAGAACTCAGAGTCCATGCTTAAACAACAGATGAAGGAACTAGAGGAGAAATACAAAGAGCGAGAGCAACAGTGGCAGCAAACTCACCATAATGTTGAAGCAGCAAAAGCGGTGGCCACACCTGAGATAGTTAGAAGCCGCGTAGATGGCGAATGTCCAAATGAGATTGAGGCTCGCATTTTACGTAGTTCGAATTCAGTAAACCGCCAGACAAATCAAAGTTCTGCTTTGTTAAAAGGGAATGATTCTACTCAACAGATGCGATACAAAAGGCAGTTCCGAAGCAACGAAGTTGAGAACCATTATGCCATGCCACTGACCTCTTTACACGATAGAAAAATCACAAGAAAATCTGATCCACCTAGAATTTTAAGGACCGGTAGGCTAACACCAAAACCGCCAGTTGTTGCTAGTCAAGCTCCTGTGTCACATAAGAGAGCTAGCACAAGCAGAGATCAGGCTCAAGGAGTTAAAGAGAGGGATAGTAAGAAGAAAATATGGTCATGA 3216 0.4024 MELTHFPDDPQTLISPHQDSIMEEDDDSSSLFDSMLCDSTSKLIPSGFTRSENQADECVMFVNAGGDAFNEAADGVMFLGDTFFDGGDVFRTNEQIAEGGDYPSLYQSARVGSFCYRIENLPPGHYLVDLHFVEIINVNGPKGMRVFNVYIQEEKVLFELDIYAVVGVNKPLQLIDSRAIVKDDGVILIRFESLNGSPVVSGICIRRASVPPVTNDFIQCNYCDAQIEISSYQMKVLQTKSTAKYENKIKELTMQCELKAKECYEAWTSLTETSRKVEEVQTELDQVTFMSLTTEQTVEKQAENLRSISLRYELDKKKWAEAITSLDEKIKLMKSDQAQLSLEAHDCVDSIPELNKMVFAVQELVKQCEDLKVMYYEEMTKRKKLFNEVQEAKGNIRVFCRCRPLNKVEMSAGCTTVVDFDAAKDGCLGILTTSGSTKKSFRFDRVYTPKDDQVDVFADASSMVISVLDGYNVCIFAYGQTGTGKTFTMEGVEQNRGVNYRTLEHLFKVSKERSETFSYDIAVSVLEVYNEQIRDLLATGPASKRLEIKQSPEGYHHVPGVVEAKVDNICDVWNVLQTGSNARAVGSNNVNEHSSRSHCMLCIMVKAKNLMNGECTKSKLWLVDLAGSERLAKTDVQGERLKEAQNINRSLSALGDVISSLAAKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSDQDVGETLSSLNFATRVRGVELGPVKKQIDSSELQKTKALLDKARSECRSKDESMKKLEESLQTIESKAKGKDNIHRSLQEKIKELEGQIELKTSMQNQSEKQISQLCEKLKGKEETCCTLQHKVKELEKKIKEQLQTETANFQQKVWDLEKKLKDQFQGSESESSFLKDKIMELERKLKEQEQNSESMLKQQIMELERKLKEQEQNSESMLKQQMKELEEKYKEREQQWQQTHHNVEAAKAVATPEIVRSRVDGECPNEIEARILRSSNSVNRQTNQSSALLKGNDSTQQMRYKRQFRSNEVENHYAMPLTSLHDRKITRKSDPPRILRTGRLTPKPPVVASQAPVSHKRASTSRDQAQGVKERDSKKKIWS 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08883 1071 Gene3D - 54 210 - -
Vifa1g08883 1071 PRINTS Kinesin heavy chain signature 619 637 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08883 1071 PRINTS Kinesin heavy chain signature 470 491 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08883 1071 PRINTS Kinesin heavy chain signature 668 689 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08883 1071 PRINTS Kinesin heavy chain signature 588 605 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08883 1071 ProSiteProfiles Kinesin motor domain profile. 395 718 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08883 1071 FunFam Kinesin-like protein KIN-14R 54 209 - -
Vifa1g08883 1071 CDD KISc_C_terminal 393 720 - -
Vifa1g08883 1071 MobiDBLite consensus disorder prediction 1010 1071 - -
Vifa1g08883 1071 Coils Coil 863 934 - -
Vifa1g08883 1071 MobiDBLite consensus disorder prediction 966 988 - -
Vifa1g08883 1071 SMART kinesin_4 393 726 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08883 1071 FunFam kinesin-like protein KIN-14R 344 720 - -
Vifa1g08883 1071 Coils Coil 831 851 - -
Vifa1g08883 1071 MobiDBLite consensus disorder prediction 1054 1071 - -
Vifa1g08883 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 718 IPR027417 -
Vifa1g08883 1071 Pfam Kinesin motor domain 401 717 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08883 1071 Pfam Malectin domain 60 202 IPR021720 -
Vifa1g08883 1071 Coils Coil 739 794 - -
Vifa1g08883 1071 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g08883 1071 PANTHER KINESIN-LIKE PROTEIN KLP-3 72 800 IPR027640 GO:0003777|GO:0007018
Vifa1g08883 1071 ProSitePatterns Kinesin motor domain signature. 618 629 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa1g08883 1071 Gene3D Kinesin motor domain 340 720 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08883 Vifa-Chr1 1407166962 1407173124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08883 367 771 Calmodulin-binding Proteins AT5G65930 41.220 1.38e-85 300