Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08882 ATGGAACTCACTCATTTTCCGGACGACCCACAAACCCTAATTTCACCACACCAAGATTCAATAATGGAAGAAGATGATGATTCCTCCTCCTTGTTCGATTCAATGCTTTGTGATTCAACTTCCAAACTCATTCCTTCTGGATTCACCAGATCTGAAAACCAAGATGAGTGTGTTATGTTTGTAAATGCGGGAGGGGATGCTTTTAATGAAGCAGCTGATGGAGTTATGTTTCTGGGTGATACCTTTTTTGATGGTGGGGATGTTTTCCGCACCAACGAGCAAATAGCGGAAGGCGGAGATTATCCGTCTTTATATCAGTCAGCTCGGGTGGGAAGTTTTTGTTATAGGATTGAGAATCTTCCTCCTGGACACTATCTTGTTGACCTTCATTTTGTTGAAATCATTAATGTAAATGGGCCAAAAGGAATGAGGGTGTTCAATGTATACATTCAAGAGGAAAAGGTTCTATTCGAATTGGATATATATGCAGTTGTTGGAGTCAACAAGCCACTGCAATTGATAGATTCTAGGGCCATTGTAAAGGATGATGGGGTAATTCTCATAAGATTTGAAAGTTTAAATGGAAGCCCAGTTGTTAGTGGGATTTGCATTAGGAGAGCGTCAGTTCCACCAGTGACAAATGATTTCATTCAATGTAACTACTGTGATGCGCAGATTGAAATCTCTTCATATCAGATGAAAGTATTGCAGACAAAATCTACAGCAAAGTATGAGAATAAGATAAAGGAGCTCACAATGCAGTGTGAGCTCAAAGCAAAGGAATGCTATGAGGCGTGGACGTCATTAACTGAAACAAGTAGGAAAGTGGAAGAAGTCCAGACAGAGCTTGACCAAGTGACATTTATGTCACTCACTACTGAACAAACTGTGGAGAAACAAGCTGAGAACCTGAGGAGTATTTCTCTCAGGTATGAACTTGATAAGAAGAAATGGGCAGAAGCTATTACCAGTTTAGATGAAAAAATAAAGTTGATGAAGAGTGATCAGGCTCAGCTTTCCCTTGAAGCACATGATTGTGTCGATTCAATCCCTGAATTAAATAAGATGGTTTTTGCAGTTCAAGAATTGGTTAAGCAGTGTGAAGATCTCAAAGTGATGTATTATGAAGAGATGACAAAGAGAAAGAAGCTATTCAATGAAGTTCAAGAGGCTAAAGGGAACATTAGGGTTTTCTGCCGTTGTCGACCATTGAATAAGGTTGAAATGTCAGCTGGATGTACGACAGTTGTGGATTTTGATGCAGCAAAGGATGGGTGCCTTGGAATTTTGACAACTAGTGGCTCCACCAAAAAATCATTCAGATTTGACAGGGTTTATACACCAAAAGATGATCAAGTTGATGTATTTGCTGATGCATCATCAATGGTAATCTCTGTGCTGGATGGCTACAATGTTTGCATATTTGCTTACGGACAAACAGGAACAGGAAAAACGTTTACTATGGAAGGAGTAGAGCAGAATAGAGGAGTCAATTACAGGACTCTTGAGCATTTGTTTAAAGTTAGTAAGGAAAGGAGTGAAACATTTTCATATGACATAGCTGTTAGTGTGCTTGAGGTTTATAATGAACAAATCAGAGACCTATTGGCTACGGGACCAGCATCAAAAAGATTGGAGATAAAACAAAGTCCTGAAGGATATCATCATGTCCCTGGTGTTGTAGAAGCCAAGGTTGACAACATATGTGATGTGTGGAACGTACTGCAGACTGGGAGTAATGCTAGAGCAGTTGGAAGTAATAATGTTAACGAGCATAGTAGTCGATCTCATTGCATGCTATGTATAATGGTAAAGGCTAAAAATTTGATGAATGGCGAGTGTACCAAGAGCAAGCTCTGGCTTGTGGATTTGGCAGGTAGTGAGAGACTTGCAAAGACTGATGTGCAAGGGGAGCGACTTAAGGAAGCACAGAATATTAATCGATCTCTTTCCGCTCTTGGAGATGTGATATCCTCTTTAGCTGCAAAAAGTAGTCACATTCCGTATAGGAACTCTAAATTGACACATTTACTCCAAGACTCACTAGGAGGTGACTCAAAAACTTTGATGTTTGTACAAATAAGTCCATCAGATCAAGACGTAGGTGAGACTCTGAGCTCGCTTAATTTTGCAACTAGAGTGAGAGGTGTTGAGTTAGGTCCTGTTAAGAAGCAAATTGACTCAAGTGAACTTCAAAAGACAAAAGCACTGCTTGACAAAGCACGAAGTGAGTGCAGAAGTAAAGATGAATCTATGAAAAAACTAGAAGAGAGTTTGCAAACCATTGAAAGTAAGGCCAAAGGAAAAGATAATATCCACAGAAGTCTACAAGAAAAGATTAAAGAACTTGAAGGCCAGATTGAGCTCAAAACATCTATGCAAAACCAATCAGAGAAACAAATTTCTCAGTTATGTGAAAAGTTGAAGGGAAAAGAAGAAACCTGCTGTACACTCCAGCATAAGGTCAAAGAGCTAGAGAAAAAAATAAAAGAACAGCTTCAGACGGAGACAGCCAATTTCCAACAGAAGGTTTGGGATCTAGAAAAGAAGCTGAAAGATCAGTTTCAAGGGTCTGAGTCTGAATCTTCCTTTCTAAAAGATAAGATCATGGAGCTTGAGAGAAAACTGAAAGAGCAGGAGCAGAACTCAGAGTCCATGCTTAAACAACAGATCATGGAGCTTGAGAGAAAACTGAAAGAGCAGGAGCAGAACTCAGAGTCCATGCTTAAACAACAGATGAAGGAACTAGAGGAGAAATACAAAGAGCGAGAGCAACAGTGGCAGCAAACTCACCATAATGTTGAAGCAGCAAAAGCGGTGGCCACACCTGAGATAGTTAGAAGCCGCGTAGATGGCGAATGTCCAAATGAGATTGAGGCTCGCATTTTACGTAGTTCGAATTCAGTAAACCGCCAGACAAATCAAAGTTCTGCTTTGTTAAAAGGGAATGATTCTACTCAACAGATGCGATACAAAAGGCAGTTCCGAAGCAACGAAGTTGAGAACCATTATGCCATGCCACTGACCTCTTTACACGATAGAAAAATCACAAGAAAATCTGATCCACCTAGAATTTTAAGGACCGGTAGGCTAACACCAAAACCGCCAGTTGTTGCTAGTCAAGCTCCTGTGTCACATAAGAGAGCTAGCACAAGCAGAGATCAGGCTCAAGGAGTTAAAGAGAGGGATAGTAAGAAGAAAATATGGTCATGA 3213 0.4021 MELTHFPDDPQTLISPHQDSIMEEDDDSSSLFDSMLCDSTSKLIPSGFTRSENQDECVMFVNAGGDAFNEAADGVMFLGDTFFDGGDVFRTNEQIAEGGDYPSLYQSARVGSFCYRIENLPPGHYLVDLHFVEIINVNGPKGMRVFNVYIQEEKVLFELDIYAVVGVNKPLQLIDSRAIVKDDGVILIRFESLNGSPVVSGICIRRASVPPVTNDFIQCNYCDAQIEISSYQMKVLQTKSTAKYENKIKELTMQCELKAKECYEAWTSLTETSRKVEEVQTELDQVTFMSLTTEQTVEKQAENLRSISLRYELDKKKWAEAITSLDEKIKLMKSDQAQLSLEAHDCVDSIPELNKMVFAVQELVKQCEDLKVMYYEEMTKRKKLFNEVQEAKGNIRVFCRCRPLNKVEMSAGCTTVVDFDAAKDGCLGILTTSGSTKKSFRFDRVYTPKDDQVDVFADASSMVISVLDGYNVCIFAYGQTGTGKTFTMEGVEQNRGVNYRTLEHLFKVSKERSETFSYDIAVSVLEVYNEQIRDLLATGPASKRLEIKQSPEGYHHVPGVVEAKVDNICDVWNVLQTGSNARAVGSNNVNEHSSRSHCMLCIMVKAKNLMNGECTKSKLWLVDLAGSERLAKTDVQGERLKEAQNINRSLSALGDVISSLAAKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSDQDVGETLSSLNFATRVRGVELGPVKKQIDSSELQKTKALLDKARSECRSKDESMKKLEESLQTIESKAKGKDNIHRSLQEKIKELEGQIELKTSMQNQSEKQISQLCEKLKGKEETCCTLQHKVKELEKKIKEQLQTETANFQQKVWDLEKKLKDQFQGSESESSFLKDKIMELERKLKEQEQNSESMLKQQIMELERKLKEQEQNSESMLKQQMKELEEKYKEREQQWQQTHHNVEAAKAVATPEIVRSRVDGECPNEIEARILRSSNSVNRQTNQSSALLKGNDSTQQMRYKRQFRSNEVENHYAMPLTSLHDRKITRKSDPPRILRTGRLTPKPPVVASQAPVSHKRASTSRDQAQGVKERDSKKKIWS 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08882 1070 CDD KISc_C_terminal 392 719 - -
Vifa1g08882 1070 PANTHER KINESIN-LIKE PROTEIN KLP-3 64 799 IPR027640 GO:0003777|GO:0007018
Vifa1g08882 1070 SMART kinesin_4 392 725 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08882 1070 Coils Coil 738 793 - -
Vifa1g08882 1070 Pfam Malectin domain 59 201 IPR021720 -
Vifa1g08882 1070 Pfam Kinesin motor domain 400 716 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08882 1070 ProSiteProfiles Kinesin motor domain profile. 394 717 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08882 1070 MobiDBLite consensus disorder prediction 1053 1070 - -
Vifa1g08882 1070 Gene3D Kinesin motor domain 339 719 IPR036961 -
Vifa1g08882 1070 MobiDBLite consensus disorder prediction 1009 1070 - -
Vifa1g08882 1070 Coils Coil 862 933 - -
Vifa1g08882 1070 Gene3D - 53 209 - -
Vifa1g08882 1070 MobiDBLite consensus disorder prediction 965 987 - -
Vifa1g08882 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 717 IPR027417 -
Vifa1g08882 1070 PRINTS Kinesin heavy chain signature 667 688 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08882 1070 PRINTS Kinesin heavy chain signature 587 604 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08882 1070 PRINTS Kinesin heavy chain signature 618 636 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08882 1070 PRINTS Kinesin heavy chain signature 469 490 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08882 1070 Coils Coil 830 850 - -
Vifa1g08882 1070 FunFam kinesin-like protein KIN-14R 343 719 - -
Vifa1g08882 1070 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g08882 1070 ProSitePatterns Kinesin motor domain signature. 617 628 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa1g08882 1070 FunFam Kinesin-like protein KIN-14R 53 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08882 Vifa-Chr1 1407166962 1407173124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08882 366 770 Calmodulin-binding Proteins AT5G65930 41.220 1.41e-85 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08882 K10406 - gmx:100800016 1598.56