Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08881 ATGGCCAAAGAGGAAGCAAAAACCGTGGTTCCTGAATCTGTTTTGAAGAAGCAGAAGAGGAACGAGGAATGGGCTTTGGTGAAGAAGCAGGAACAAGAGTCAGCGAAGAAGAAGAGATCTGAAACAAGGAAGCTCATTTGGAGCAGAGCCAAGCAGTACGCTAAGGAGTATGATGACCAGCAAAAGGAGTTGATTAGCTTGAAGCGTGAAGCTAAACTGAAGGGTGGGTTTTATGTTGATCCTGAAGCTAAGCTCTTGTTCATTGTCAGGATCAGAGGTATCAATGCCATGGACCCAAAATCAAGGAAGATTTTACAGCTTTTGCGTTTGAGACAGATCTTTAATGGTGTCTTTCTCAAAGTTAACAAAGCCACCGTGAACATGCTCCACAGGGTAGAGCCATATGTCACCTATGGGTATCCTAATCTGAAGAGTGTCAGAGAATTGATCTACAAGAGGGGCTATGGAAAGGTTGACAGGCAGAGAATTGCTTTGACTGACAACTCAATCATCGAACAGGTCCTTGGGAAGCACGGAATCATTTGCATTGAAGATCTGATTCATGAGATCTTGACTGTTGGACCTCACTTCAGAGAGGCAAACAACTTCCTATGGCCTTTCAAGCTCAAAGCTCCCTTGGGTGGCATGAAGAAGAAAAGAAATCATTATGTTGAAGGTGGTGATGCCGGCAATAGGGAAGAATACATCAACGAGCTCATTAGAAGGATGAATTAG 735 0.4381 MAKEEAKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDQQKELISLKREAKLKGGFYVDPEAKLLFIVRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREEYINELIRRMN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08881 244 ProSitePatterns Ribosomal protein L30 signature. 104 136 IPR018038 -
Vifa1g08881 244 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
Vifa1g08881 244 Gene3D - 85 190 IPR036919 -
Vifa1g08881 244 Gene3D - 191 244 IPR036919 -
Vifa1g08881 244 PANTHER 60S RIBOSOMAL PROTEIN L7 8 244 IPR039699 -
Vifa1g08881 244 CDD Ribosomal_L7_archeal_euk 85 244 IPR035808 -
Vifa1g08881 244 NCBIfam 60S ribosomal protein uL30 11 244 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vifa1g08881 244 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Vifa1g08881 244 FunFam 60S ribosomal protein L7 85 189 - -
Vifa1g08881 244 SUPERFAMILY Ribosomal protein L30p/L7e 85 244 IPR036919 -
Vifa1g08881 244 Coils Coil 50 70 - -
Vifa1g08881 244 FunFam 60S ribosomal protein L7 190 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08881 Vifa-Chr1 1407021530 1407023796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08881 1 244 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 81.967 4.18e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08881 K02937 - gmx:100500011 433.721