Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08880 ATGAGTTTTCTGAACGGTGCTTCACCGCGCCGGAGTCCAGCGGAGAATGTTGATATTGAAGCTGGTCCGTTGTCTCGCCGCTCTTCGGATATTGATGACGACGGTGATCTTTCCGATCCGTTTGATATTGCTAGAACAAAGCACGCTTCTATTAATCGACTGAGACGCTGGAGACAAGCGGCGCTTGTGCTAAATGCTTCCCGTCGATTTCGTTATACCTTGGACTTGAAGAAAGAAGAAGAGAAGAAACAAATACTGAGAAAGATTAGAGCGCACGCACAAGCCATTAGAGCAGCATATCTTTTCAAAGCAGCTGGGGGGCAGGGACAAGGACAAGAGCAAGGACAAGAGCAAGTGAGTGAAACTACAAAGCCTCTTCAAACCTCTACCGGTGAATTTGCAATTGGACCAGAGCAACTCGCCTCCATTTCAAGGGAGCACGATATTGCCTCATTGCAGCAATATGGAGGGGTTGCAGGGGTATCAAATTTATTGAAAACTGATTTAGAGAAGGGAGTTGATGGTGATGATGCCGACTTACTAAGACGGAGGAATGCATTTGGTTCCAACAATTACCCTCGAAAGAAAGGAAGAAGTTTTCTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCATTGGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTCGCAGTTATTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACTTGGAGGTTGTTAGAGGTGGTAGAAGGGTTGAGATCTCAATATATGATCTTGTTGTTGGGGATGTTATTCCTCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTGTGATCAGTGGTCACTCTCTTTCCATTGATGAATCGAGCATGACGGGGGAGAGCAAAATTGCCCACAAGGATTCTAAGAATCCCTTTCTGATGTCTGGCTGTAAGGTTGCAGATGGCAGTGGTACTATGCTGGTAACGGGTGTTGGAATTAACACTGAATGGGGCCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTCTGCAGGTCCGCTTGAATGGCGTAGCCACCTTCATTGGTATTGTTGGACTCACTGTTGCTGTTATTGTCCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATTCGAAGAATAGTGATGGGACAAAACAGTTTACAGCTGGCAGGACCTCAGCTAGTGATGCTGTTGATGGAGCAATTAAGATAATAACTGTTGCGGTCACCATTGTAGTTGTTGCAGTGCCTGAGGGGCTCCCACTTGCAGTCACTTTAACTCTGGCCTACTCAATGCGGAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAAACAATGGGCTCTGCTACAACCATATGCAGCGATAAGACCGGCACATTGACTATGAATCAGATGACTGTGGTTGAGGTTTATGCTGGGGGCAGTAAGATTGATCCACCTCACCAGTTGGAGAGTTCTCCTAAGCTACGCGCTCTACTCATTGAAGGTGTTGCGCAGAACACTAATGGCAGCGTTTTTGTCCCTGAGGGTGCTAATGATGTTGAGGTTTCTGGATCGCCAACAGAAAAAGCAATTTTACATTGGGCACTAAAGGTTGGGATGAATTTCGTGAATGCTCGGTCAGAATCATCAATTCTTCATGTCTTTCCTTTCAACTCGGAGAAAAAGAGAGGCGGAGTTGCAATACAGACGGCTGACTCTGTTCATATACATTGGAAAGGTGCTGCTGAGATTGTTCTAGCCTGCTGTACAGGGTATATTGATAGAAATGACCAGCTGGTGGAAATAGATGAAGAAAAGGTTTGA 1941 0.4503 MSFLNGASPRRSPAENVDIEAGPLSRRSSDIDDDGDLSDPFDIARTKHASINRLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGQGQGQEQGQEQVSETTKPLQTSTGEFAIGPEQLASISREHDIASLQQYGGVAGVSNLLKTDLEKGVDGDDADLLRRRNAFGSNNYPRKKGRSFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEEKRNIHLEVVRGGRRVEISIYDLVVGDVIPLNIGNQVPADGIVISGHSLSIDESSMTGESKIAHKDSKNPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVIVLIVLLARYFSGHSKNSDGTKQFTAGRTSASDAVDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEVYAGGSKIDPPHQLESSPKLRALLIEGVAQNTNGSVFVPEGANDVEVSGSPTEKAILHWALKVGMNFVNARSESSILHVFPFNSEKKRGGVAIQTADSVHIHWKGAAEIVLACCTGYIDRNDQLVEIDEEKV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08880 646 MobiDBLite consensus disorder prediction 1 37 - -
Vifa1g08880 646 Pfam Cation transport ATPase (P-type) 555 629 - -
Vifa1g08880 646 SMART Cation_ATPase_N_a_2 154 228 IPR004014 -
Vifa1g08880 646 ProSitePatterns E1-E2 ATPases phosphorylation site. 500 506 IPR018303 -
Vifa1g08880 646 FunFam Calcium-transporting ATPase 254 374 - -
Vifa1g08880 646 PRINTS P-type cation-transporting ATPase superfamily signature 498 512 - -
Vifa1g08880 646 PRINTS P-type cation-transporting ATPase superfamily signature 322 336 - -
Vifa1g08880 646 FunFam Calcium-transporting ATPase 49 105 - -
Vifa1g08880 646 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 644 IPR023299 GO:0000166
Vifa1g08880 646 PRINTS Sodium/potassium-transporting ATPase signature 241 261 - -
Vifa1g08880 646 PRINTS Sodium/potassium-transporting ATPase signature 491 512 - -
Vifa1g08880 646 PRINTS Sodium/potassium-transporting ATPase signature 615 633 - -
Vifa1g08880 646 FunFam Calcium-transporting ATPase 9 plasma membrane-type 352 522 - -
Vifa1g08880 646 Pfam Cation transporter/ATPase, N-terminus 156 223 IPR004014 -
Vifa1g08880 646 FunFam Calcium-transporting ATPase 206 263 - -
Vifa1g08880 646 Gene3D - 551 646 IPR023299 GO:0000166
Vifa1g08880 646 Pfam Ca2+-ATPase N terminal autoinhibitory domain 37 81 IPR024750 GO:0005516
Vifa1g08880 646 Pfam E1-E2 ATPase 276 476 - -
Vifa1g08880 646 SUPERFAMILY Calcium ATPase, transduction domain A 276 371 IPR008250 -
Vifa1g08880 646 Gene3D - 160 349 - -
Vifa1g08880 646 NCBIfam HAD-IC family P-type ATPase 438 521 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g08880 646 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 492 IPR023298 -
Vifa1g08880 646 Gene3D - 49 104 - -
Vifa1g08880 646 PANTHER CATION TRANSPORTING ATPASE 122 645 - -
Vifa1g08880 646 Gene3D - 350 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08880 Vifa-Chr1 1405763517 1405772360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08880 19 645 Primary Pumps ATPases AT5G57110 68.819 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08880 K01537 - gmx:100792945 1034.63