LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g08880	ATGAGTTTTCTGAACGGTGCTTCACCGCGCCGGAGTCCAGCGGAGAATGTTGATATTGAAGCTGGTCCGTTGTCTCGCCGCTCTTCGGATATTGATGACGACGGTGATCTTTCCGATCCGTTTGATATTGCTAGAACAAAGCACGCTTCTATTAATCGACTGAGACGCTGGAGACAAGCGGCGCTTGTGCTAAATGCTTCCCGTCGATTTCGTTATACCTTGGACTTGAAGAAAGAAGAAGAGAAGAAACAAATACTGAGAAAGATTAGAGCGCACGCACAAGCCATTAGAGCAGCATATCTTTTCAAAGCAGCTGGGGGGCAGGGACAAGGACAAGAGCAAGGACAAGAGCAAGTGAGTGAAACTACAAAGCCTCTTCAAACCTCTACCGGTGAATTTGCAATTGGACCAGAGCAACTCGCCTCCATTTCAAGGGAGCACGATATTGCCTCATTGCAGCAATATGGAGGGGTTGCAGGGGTATCAAATTTATTGAAAACTGATTTAGAGAAGGGAGTTGATGGTGATGATGCCGACTTACTAAGACGGAGGAATGCATTTGGTTCCAACAATTACCCTCGAAAGAAAGGAAGAAGTTTTCTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCATTGGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTCGCAGTTATTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACTTGGAGGTTGTTAGAGGTGGTAGAAGGGTTGAGATCTCAATATATGATCTTGTTGTTGGGGATGTTATTCCTCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTGTGATCAGTGGTCACTCTCTTTCCATTGATGAATCGAGCATGACGGGGGAGAGCAAAATTGCCCACAAGGATTCTAAGAATCCCTTTCTGATGTCTGGCTGTAAGGTTGCAGATGGCAGTGGTACTATGCTGGTAACGGGTGTTGGAATTAACACTGAATGGGGCCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTCTGCAGGTCCGCTTGAATGGCGTAGCCACCTTCATTGGTATTGTTGGACTCACTGTTGCTGTTATTGTCCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATTCGAAGAATAGTGATGGGACAAAACAGTTTACAGCTGGCAGGACCTCAGCTAGTGATGCTGTTGATGGAGCAATTAAGATAATAACTGTTGCGGTCACCATTGTAGTTGTTGCAGTGCCTGAGGGGCTCCCACTTGCAGTCACTTTAACTCTGGCCTACTCAATGCGGAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAAACAATGGGCTCTGCTACAACCATATGCAGCGATAAGACCGGCACATTGACTATGAATCAGATGACTGTGGTTGAGGTTTATGCTGGGGGCAGTAAGATTGATCCACCTCACCAGTTGGAGAGTTCTCCTAAGCTACGCGCTCTACTCATTGAAGGTGTTGCGCAGAACACTAATGGCAGCGTTTTTGTCCCTGAGGGTGCTAATGATGTTGAGGTTTCTGGATCGCCAACAGAAAAAGCAATTTTACATTGGGCACTAAAGGTTGGGATGAATTTCGTGAATGCTCGGTCAGAATCATCAATTCTTCATGTCTTTCCTTTCAACTCGGAGAAAAAGAGAGGCGGAGTTGCAATACAGACGGCTGACTCTGTTCATATACATTGGAAAGGTGCTGCTGAGATTGTTCTAGCCTGCTGTACAGGGTATATTGATAGAAATGACCAGCTGGTGGAAATAGATGAAGAAAAGGTTTGA	1941	0.4503	MSFLNGASPRRSPAENVDIEAGPLSRRSSDIDDDGDLSDPFDIARTKHASINRLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGQGQGQEQGQEQVSETTKPLQTSTGEFAIGPEQLASISREHDIASLQQYGGVAGVSNLLKTDLEKGVDGDDADLLRRRNAFGSNNYPRKKGRSFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEEKRNIHLEVVRGGRRVEISIYDLVVGDVIPLNIGNQVPADGIVISGHSLSIDESSMTGESKIAHKDSKNPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVIVLIVLLARYFSGHSKNSDGTKQFTAGRTSASDAVDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEVYAGGSKIDPPHQLESSPKLRALLIEGVAQNTNGSVFVPEGANDVEVSGSPTEKAILHWALKVGMNFVNARSESSILHVFPFNSEKKRGGVAIQTADSVHIHWKGAAEIVLACCTGYIDRNDQLVEIDEEKV	646

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g08880	646	MobiDBLite	consensus disorder prediction	1	37	-	-
	Vifa1g08880	646	Pfam	Cation transport ATPase (P-type)	555	629	-	-
	Vifa1g08880	646	SMART	Cation_ATPase_N_a_2	154	228	IPR004014	-
	Vifa1g08880	646	ProSitePatterns	E1-E2 ATPases phosphorylation site.	500	506	IPR018303	-
	Vifa1g08880	646	FunFam	Calcium-transporting ATPase	254	374	-	-
	Vifa1g08880	646	PRINTS	P-type cation-transporting ATPase superfamily signature	498	512	-	-
	Vifa1g08880	646	PRINTS	P-type cation-transporting ATPase superfamily signature	322	336	-	-
	Vifa1g08880	646	FunFam	Calcium-transporting ATPase	49	105	-	-
	Vifa1g08880	646	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	504	644	IPR023299	GO:0000166
	Vifa1g08880	646	PRINTS	Sodium/potassium-transporting ATPase signature	241	261	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g08880	Vifa-Chr1	1405763517	1405772360	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g08880	19	645	Primary Pumps ATPases	AT5G57110	68.819	0.0	858

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g08880	K01537		-	gmx:100792945	1034.63

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