Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08879 ATGGAGCAAACCTGTCTAGTAGCCGTAGTGCTGTCTATGGCCGTGAAATCCCAGAGGAGTGGCGGAGAAGATAAGATGAACACAACAGGTTTTCCTTTTGTTGCGGCCTCTCCTAACTTCTCCTTTGCGATCTCCCCTTTTCATATGACTTACTTCAAAAAAGCTATTGAAGACATGGCTTCTGATAGTTTAAGATGTGTTGCCATCGCATATAGACCATATGAGGATGCAGTTCCAGATACTGAGGAAGAACTTGCTCACTGGTCTTTGCCAGAGGATGGACTTGTTTTACTAGCCATTGTTGGTATCAAGGATCCTTGTCGACCTGGTGTCAAAGATTCAGTACAGCTTTGCCAAAAAGCCGGGGTTAAGGTAAGGATGGTCACGGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTAGCTCACTTGCTGATGCTACAGAGAGAAATGTCATTGAAGGAAAAACATTTCGAGCCTTGTCAGATTCAGAGAGAGAAGATATTGCAGATTCGATATCGGTTATGGGAAGGTCATCTCCCAACGATAAACTATTGTTAGTACAAGCATTAAGGAGGAAGGGCCATGTTGTTGCTGTAACCGGGGATGGAACGAATGATGCTCCTGCACTTCATGAGGCGGATATTGGTCTTGCTATGGGTATTGCTGGCACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATATTGGATGACAACTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTCGGTCTGTTTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTGACAGTCAATGTGGCAGCTCTTGTTATAAATGTTGTTGCCGCAGTTTCCTCTGGTGAAGTTCCACTTAATGCAGTGCAGCTTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTCATGGATCGAACTCCTGTGGGTCGAAGGGAACCTCTCATAACAAATATCATGTGGAGGAATTTGCTGATACAGGCGATGTATCAAGTGTCGGTTTTGCTTGTTCTCAATTTCCAAGGTGTACGCATATTGGGTCTTGAGCATCAAAACAGTGAACATGCTATCAAAGTAAAGAACACTTTGATCTTCAACGCTTTTGTTATCTGTCAAGTATTCAATGAATTCAATGCTCGTAAGCCAGATGAATTCAACATTTTTAAAGGAGTCACTAGAAACTTCCTCTTTATGGGGATAGTGGCATTTACTGTTGTACTTCAGGTTATTATTGTTGAATTTCTTGGGAAGTTCACTAAAACTACCAGGCTTAATTGGCAGCAGTGGCTCATTTCTGTCGTTATTGGATTCATTGGTTGGCCTCTTGCCGTTGTTGGGAAATTGATACCAGTACCAGCAACTCCCATCAACAATGTTTTCTCTAAGATTCGAAGAACTAAAAAAAGTGAAGAACCTGTGGCTTCTCAATAG 1488 0.4234 MEQTCLVAVVLSMAVKSQRSGGEDKMNTTGFPFVAASPNFSFAISPFHMTYFKKAIEDMASDSLRCVAIAYRPYEDAVPDTEEELAHWSLPEDGLVLLAIVGIKDPCRPGVKDSVQLCQKAGVKVRMVTGDNVKTAKAIAVECGILSSLADATERNVIEGKTFRALSDSEREDIADSISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGEVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFQGVRILGLEHQNSEHAIKVKNTLIFNAFVICQVFNEFNARKPDEFNIFKGVTRNFLFMGIVAFTVVLQVIIVEFLGKFTKTTRLNWQQWLISVVIGFIGWPLAVVGKLIPVPATPINNVFSKIRRTKKSEEPVASQ 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08879 495 Pfam Cation transporting ATPase, C-terminus 291 467 IPR006068 -
Vifa1g08879 495 SUPERFAMILY HAD-like 46 311 IPR036412 -
Vifa1g08879 495 PRINTS P-type cation-transporting ATPase superfamily signature 206 225 - -
Vifa1g08879 495 PRINTS P-type cation-transporting ATPase superfamily signature 99 110 - -
Vifa1g08879 495 PRINTS P-type cation-transporting ATPase superfamily signature 121 131 - -
Vifa1g08879 495 PRINTS P-type cation-transporting ATPase superfamily signature 230 242 - -
Vifa1g08879 495 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 470 IPR023298 -
Vifa1g08879 495 FunFam Calcium-transporting ATPase 223 472 - -
Vifa1g08879 495 Gene3D - 107 251 IPR023214 -
Vifa1g08879 495 Gene3D - 252 457 - -
Vifa1g08879 495 FunFam Calcium-transporting ATPase 99 251 - -
Vifa1g08879 495 Gene3D - 52 106 IPR023299 GO:0000166
Vifa1g08879 495 PRINTS H+-transporting ATPase (proton pump) signature 206 222 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g08879 495 PRINTS H+-transporting ATPase (proton pump) signature 52 70 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g08879 495 PRINTS H+-transporting ATPase (proton pump) signature 238 263 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g08879 495 PANTHER CATION TRANSPORTING ATPASE 49 470 - -
Vifa1g08879 495 Pfam haloacid dehalogenase-like hydrolase 97 220 - -
Vifa1g08879 495 NCBIfam HAD-IC family P-type ATPase 173 286 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g08879 495 NCBIfam calcium-translocating P-type ATPase, PMCA-type 50 470 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08879 Vifa-Chr1 1405754825 1405760682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08879 50 477 Primary Pumps ATPases AT5G57110 80.607 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08879 K01537 - gmx:100820121 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08879 1 1405754825 1405760682 Vifa1g08879 1 1405754825 1405760682 ECH