Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08878 ATGGCGTGGCTGGAGCTTGGAAAGAAGAGAATGTATATGAATTTGACCAGAGCTTTGGCTACAACGTCACGTAGACATGTGGTAGGGTCAAGTTTTGCATCTATGTTTGCTGAACAATCTGTTTATACTTCAGCAAGATGCATGCCTGATTTCATCAATCGCTCTTATCTTGGTGCGGCTGGTTTTTGTATTGGGACTAAAGAAAATGGAACACGGTGCTTCCATGCTAGCTCACAAGTCTGGGCAAGAAGTGATGCCGCATATGGTTTGAAGACCCCAAAGAAGGAGAAGTATGTGAGAAAAGACAGTAGAAATCAGCCTTCTGTTGAAGCTCCCTATGTCCCTCGTAATGCCACATCAGCCAAATCTAATCCCGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTTCTGGAAAATCAGTATCTTCTTTGCAAGATATTCTCACAAATGTTGGTGAAAAGATTGAATCAGAGTTTGACCCTCTCACTATGGATGTTGCCGAGCTTGCTGCAATGGAGGTTGGCGTCAATGTTAAGAGGTTACATTCAACCGAAGGTGCAGAACTTTTACCACGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCACGGCAAAACTTCCCTTCTCGATGCCTTACGTCTAACATCAGTGGCAGCCAAGGAGGCTGGTGGCATTACTCAGCATCTAGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACATTTCTTGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGTGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTAATGCCCCAAACACTTGAAGCCGTGTCCCATGCAAAATTAGCTAATGTACCAATTGTAGTTGCAATCAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTAAAATTACAGCTTGCTTCTGAGGGTTTGCTACTGGAGGAGATGGGTGGGGATATTCAGGTTGTTGAAGTGTCAGCGGTTCAAAAGACTGGACTGGACAACTTAGAAGTAGCTTTACTACTTCAGGCTGATATGATGGACCTTAAAGCACGATTTGATGGGCCTGCTCAAGCATATGTGGTTGAAGCAAGACTTGACAAAGGACGAGGTCCGTTGGTGACTACTATAGTTAAGGCTGGGACTCTAGTTTGTGGACAGCATGTGGTTATAGGCTCACAGTGGGGAAAAATTAGGGCTATTAAAGATACAGCAGGGAGGTTAACTCAACGAGCAACTCCTGCAATGCCTGTTGAAATTGAAGGGCTCCGAGGGCTGCCAATGGCTGGTGATGATGTCATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGAAAAAGAAATCTGAAGAAGACAGGCTTAAGGGCAAGATGGTGCAGATTGTGCCGACTACTTCAGAAGATTCTGAGGAGGGGATTCCACTCAGGGTTGAAATGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTTACAGATGCATTGACAACTTTAAATAGTCCCCAGGTTTCTGTGAATATTGTTCATGTTGGCGTGGGGCCTATTTCTCAATCTGATGTTGATCTAGCGCAGGCTTGTGGTGCATGCATAGTTGGATTCAATGTCAAGAGTCCACCTATTTCTCTTAGCCAGGCAGCAACTCGTGCTAGTATCAAGGTAATTCTGCACCGTGTAATTTACCACTTATTGGAAGATATAGCCAATTTAATAATTGAGAAGGCCCCGGGTACTTCCGAGACTCAGGTAGCTGGGCAAGCAGAAGTTCTGAATATATTTGAAGTGAAAGGGAGCAAATCTAAGGGACCTGATGTGAAAATAGCTGGTTGTAAGGTTGTTGATGGTTTTGTGAACAGGTTAGCAACCATGAGGCTTCTAAGAAGTGGTGAAGTGGTGTTTGAAGGACTTTGTTCATCTCTTAAAAGGGAGAAGCAGGATGTGGATTCTGTGAAGAAAGGAACTGAGTGTGGACTAGTAATCAATAACTGTTCTGATTTTCAGATCGGTGATGTTGTCCAGTGCTTAGAACAAGTAGTAAGGAAGCCCAAGTTTGTTAAGTCGGAGAGTGGTGCTGTTCGAATAGAGTGCTGA 2163 0.4411 MAWLELGKKRMYMNLTRALATTSRRHVVGSSFASMFAEQSVYTSARCMPDFINRSYLGAAGFCIGTKENGTRCFHASSQVWARSDAAYGLKTPKKEKYVRKDSRNQPSVEAPYVPRNATSAKSNPDKTIEIFEGMTLVELAKRSGKSVSSLQDILTNVGEKIESEFDPLTMDVAELAAMEVGVNVKRLHSTEGAELLPRPAVVTVMGHVDHGKTSLLDALRLTSVAAKEAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAVSHAKLANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVVEVSAVQKTGLDNLEVALLLQADMMDLKARFDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVIGSQWGKIRAIKDTAGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKKKSEEDRLKGKMVQIVPTTSEDSEEGIPLRVEMPVIVKADVQGTVQAVTDALTTLNSPQVSVNIVHVGVGPISQSDVDLAQACGACIVGFNVKSPPISLSQAATRASIKVILHRVIYHLLEDIANLIIEKAPGTSETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCKVVDGFVNRLATMRLLRSGEVVFEGLCSSLKREKQDVDSVKKGTECGLVINNCSDFQIGDVVQCLEQVVRKPKFVKSESGAVRIEC 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08878 720 MobiDBLite consensus disorder prediction 101 122 - -
Vifa1g08878 720 NCBIfam small GTP-binding protein domain 201 353 IPR005225 GO:0005525
Vifa1g08878 720 Gene3D - 196 370 IPR027417 -
Vifa1g08878 720 Pfam Elongation factor Tu GTP binding domain 203 355 IPR000795 GO:0003924|GO:0005525
Vifa1g08878 720 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Vifa1g08878 720 FunFam Translation initiation factor IF-2 498 602 - -
Vifa1g08878 720 NCBIfam translation initiation factor IF-2 126 703 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vifa1g08878 720 Gene3D Translation factors 603 705 - -
Vifa1g08878 720 Gene3D - 498 601 IPR036925 -
Vifa1g08878 720 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 498 608 IPR036925 -
Vifa1g08878 720 FunFam Translation initiation factor IF-2 195 370 - -
Vifa1g08878 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 389 IPR027417 -
Vifa1g08878 720 FunFam Translation initiation factor IF-2 604 707 - -
Vifa1g08878 720 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Vifa1g08878 720 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 97 713 IPR015760 -
Vifa1g08878 720 CDD IF2_mtIF2_II 374 469 IPR044145 -
Vifa1g08878 720 Pfam Translation-initiation factor 2 499 591 IPR023115 -
Vifa1g08878 720 Hamap Translation initiation factor IF-2 [infB]. 8 706 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vifa1g08878 720 CDD mtIF2_IVc 609 698 - -
Vifa1g08878 720 SUPERFAMILY Translation proteins 604 705 IPR009000 -
Vifa1g08878 720 CDD IF2_eIF5B 202 365 - -
Vifa1g08878 720 Gene3D Translation factors 371 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08878 Vifa-Chr1 1405697680 1405702286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08878 189 684 Eukaryotic Initiation Factors Gene Family AT1G76810 26.585 3.88e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08878 K02519 - gmx:100781314 1161.75