Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08870 ATGGCTTTTCCTGGTTCCTTGCAACTGTCCAATGGATTGGGCATTTGCGCGAACCTGAACCTGAGCTCCAATAAAGATGTGAGGGTAACGGGAAGATACAAGTTACAATTATTCAATGAATATCCCTCACATTCAGTTTTGTTCATGAAACAGGACTGCAGGGGTCTTCGACACCTCCGTCGTGTAAACAAGTCAACACATAGATTGTCTTGCAGATCACGATCTTTTAAATGTCATTGTTTTTTAGTGTCAGGCCAACCAATTGCGTTTCCTTCAGCTAAGGTGGTTACTACAGTGCTGACTAGGTGCTGTAATGTGTTACAAAATAGTTCAGTCATTGTGAAGTTGATTCCTGCTATTGGCACTATCATTTTTGCAGTATGGGGTGTTGGCCCATTAATGTTTCAGACAAGGAAACATTTTTTTCAGAGGAGTGATAATAGTTGGAAAAAAAGTACCACTCTTTACATAGTAACTTCATACCTTCGACCACTACTATTATGGACTGGCGCCATACTTATTTGCAGATCATTTGAGTCAGTAATTCTACCTACCGAAACTAGCCAGGTTGTTAAGGAACGGCTTCTGAGTTTTGTTAAATCATTGTCAACTGTAGTGGCTTTTGCCTATTGTTTATCAAGTGCAATTCAACAAGCACAGAAATTTGTAGCAGAGAATGCAGATGCAAGTGAGACAAGAAATATGGGGTTCCAATTTGCAGGCAAAGCTGTTTATTCGGCTGTATGGATTGCTGCCTTTTCATTGTTTATGGAATTGCTGGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTTTTGGGACAGTTTTGTTGACTCTTGCTGGTCGTGAGATATTTACAAACTTTCTTTCAAGCGTGATGATTCACGCAACTCGGCCTTTTGTTGTAAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGCACTGTTGAGCATGTTGGCTGGTGGTCCCCAACAATTATACGAGGCGAAGATCGTGAAGCGGTACACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGAAACCTCAGTCAAAAAACACATTGGAGAATCAAAACTCACCTAGCCATTAGTCATTTGGATGTAAATAAGATCAATAACATTGTTGCTGACATGCGGAAAGTATTAGCCAAAAATCCTCAAGTTGAGCAGCAGAAGTTGCACAGGAGAGTGTTTTTGGACAATATAAACCCTGAAAATCAGGCTCTCATGATTCTGATTTCTTGTTTTGTCAAGACCTCGCATTTTGAAGAATATTTGTGTGTTAAGGAAACTATACTATTGGATCTTCTTAGAGTTATCAGCCATCACCGAGCCCGGCTTGCAACACCAGTCCGTACCCTACTGAAAGTATATAGCGATGCCGACTTGGACAACATACCATACGCAGATTCTGGAACAGTATCTAACCGCCCATTATTAGTGATTGAATCGCCTTACAAAAACAATGCAGATGATAAAACAAAAAGTCGATCAACACGTGCAACTGTTGATCAAGATAACAAGACAACTGGGCAAACCAAACTTGATGCCAAGACAGACAAGGTTGGACCAATAGGAACACCAGATACCAAAGTTAGAGAAACTCAAGATAACTCTGAGGTGGATGTCAAAGTCATGGCATCTACCTCTGATGCAAATGGAAACTTTAAACTTGATTCCGAAGTGGGTGAAAACAAGCCACTGAGATCAAATTTAAACAAGGCAAATGTGGAGGTGCCAGAAATGTTTTCTAATTCTAACTCCAAAGTAACTGGTTTAGAATTAGATAATTCATCCCAGAAGGATATCCATGTGAAACAATCTAAGGGTCAAACCATTAAAAACATCAAGCCGAAAGTTGACTCAGAGAATCTAGTTTCCTCATCAACAAACAACATTGAGAAAGCCAATGGAAATGTGCCAACAAAACAGGAAGGAGAAAGGAAACCTGCTGCATCCAGGCCTATTCTAGAAGAAAATATTGTACTCGGCGTTGCATTGGAGGGATCAAAGAGGACACTTCCTATTAATGAGGGGATTGACACTGTGACAACTCAAGAGAACAAGGAAATGGCTGCATTTCAGGGTGGAAATGGATCTCCAAAGCCTTCAGATGGGAATGTAAATTAA 2145 0.4037 MAFPGSLQLSNGLGICANLNLSSNKDVRVTGRYKLQLFNEYPSHSVLFMKQDCRGLRHLRRVNKSTHRLSCRSRSFKCHCFLVSGQPIAFPSAKVVTTVLTRCCNVLQNSSVIVKLIPAIGTIIFAVWGVGPLMFQTRKHFFQRSDNSWKKSTTLYIVTSYLRPLLLWTGAILICRSFESVILPTETSQVVKERLLSFVKSLSTVVAFAYCLSSAIQQAQKFVAENADASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGFGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLDNINPENQALMILISCFVKTSHFEEYLCVKETILLDLLRVISHHRARLATPVRTLLKVYSDADLDNIPYADSGTVSNRPLLVIESPYKNNADDKTKSRSTRATVDQDNKTTGQTKLDAKTDKVGPIGTPDTKVRETQDNSEVDVKVMASTSDANGNFKLDSEVGENKPLRSNLNKANVEVPEMFSNSNSKVTGLELDNSSQKDIHVKQSKGQTIKNIKPKVDSENLVSSSTNNIEKANGNVPTKQEGERKPAASRPILEENIVLGVALEGSKRTLPINEGIDTVTTQENKEMAAFQGGNGSPKPSDGNVN 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08870 714 SUPERFAMILY Sm-like ribonucleoproteins 285 355 IPR010920 -
Vifa1g08870 714 Pfam Mechanosensitive ion channel 242 449 IPR006685 GO:0016020|GO:0055085
Vifa1g08870 714 MobiDBLite consensus disorder prediction 492 544 - -
Vifa1g08870 714 MobiDBLite consensus disorder prediction 689 714 - -
Vifa1g08870 714 Gene3D - 301 356 IPR023408 -
Vifa1g08870 714 Gene3D - 195 299 - -
Vifa1g08870 714 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 697 IPR045042 -
Vifa1g08870 714 MobiDBLite consensus disorder prediction 493 507 - -
Vifa1g08870 714 MobiDBLite consensus disorder prediction 625 657 - -
Vifa1g08870 714 MobiDBLite consensus disorder prediction 625 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08870 Vifa-Chr1 1404287155 1404293306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08870 9 704 Mechanosensitive Ion Channel Family AT5G10490 52.841 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08870 K22047 - gmx:100789444 1074.69