Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08858 ATGGATGCAACACAAAAAGAGAAAATCTATGTTGCTATTAGTGATGATGCACGAGATGGATTTATTACTTTAAATTGGGCTCTTAAGAAATGGAACTCTCATCCAATTTCCATTGTTATTCTTCATGTGACTCATAGCAGTTCTAAGGACTATGTTTATACACCATTTGGAAAACTTCCAGCAAGATCTTTGAATGATGAGAAACTTGAAGCTCTAAGAAAAGATGAGAAAGAGAGAATCAAGAAGCTCTTTTCCAAATATATTGCTTTTTGTGGCAAGGTGTCAGTAGAAATTCTTGAAATCGAGAAATTTGATGAACCAATGCAGAAGCACGTCGTAGATATGACAAACGAATTAGAAATAACTAAATTGGTTATGGGATTTTCATTCATGAAGCCTTCCTTGAAATCAAAAGGTGCTATTAGTGGATTATTCTATGTTCATCAACACAAACCTAGTTCATGTGAATTATTCATTATATGTGGTGGCAAACAAGTCTTTCTAAGAGGAAACAATGATGAGAAAATCATGGAAGATGATAGTGGAGTAATGGTTGCAAAAATGAAAGATAAGGTAACTTTTAAGGATTGGTTAGACAAAATGCTTAGTGACAAAACAAGTGATTATTCTCATAATAGATTAAGTGGTTCTCCTTCATCGACCAATTTGGTTCAAAATCAATGGGAGTTTTATCTTCAAGACAGAGAAAATTATTATCAAGAGTTGTTGTTATCATCTTCAAATTTGGAGGAAGGAATTTGTGTGCAGGAGAATGATGAGTTGCACGTTGGTACAAAAATTGGGCCACTTGTCATTGAATTGAACAAGTCTAATAAGAATACAGCAGAAAAAATTGAGATCCTAGGTAAAACCGCCGAGTTGAAAAGAAAAGAGACTAGGGAAAATATAGAAAGGCGCACAAAAGCTGAATGGGCAATTAGCTTATGCAAAAGCAGGGCAGAAGAACTTGAAGGTAGAATAAGGGAAGAAGTGAGTACAAAGGAGAATCGCAACAAGGAACTGCATTTAGAGAAAGAGCAAAGAGAAGAAATGAGAACAGAGATTAAAGAGAGAAAACAAAGGATGAATTCATTATTAGAGCTTCAATCAGAACTATCAAACAAGCTTCAAATCTCAACAATATCAAGGTCAAGAGCAGAGACACAGGTAGAGAGAGCGGTGAGGGAGAGAACGGACATGGTGAGGGAGATAGAGGAGTTGAGGAAGCAAAGGGACGTATTGAATCGAAGGATCGAGTTTTGTAAGCAGAAAGATGCTATAGGTATGGCAGCGAGGTTGGGAGACAATGGTGGCACGAGTTGCGGAATGAGGGAGTATAGTGAGGAGGAGTTGAGGTTGGCGACTGATAACTTTTCTGAGCGGTTGAGGTTGAAGTGTGGTCGGGAATGGACTAACGTGTATAGAGGACGGTTTAACCACTCTACCGTTGCGATTAAGATCATGACTTCTTTTGCTTCTTTGTCTAAAGAGGATTTTCAATCTAAGGTGAGGTTTTTTGGTGATATTAGGCATCCACATCTAGTTGCTGTGGTAGGCTTCTGCTCGGAGCCGAAATATGTAGTTTTTGAATACATGGGCAATGGAAGCTTACAAGACATGTTGTTTACCAGAAGAAGAAATAGAGGCTTACGTTGGCACGATCGAATACGTATTGCGACAGAAGTATGCTCGGGCCTGGGCTTTCTGAATTCATCTCAACAAAGGTCTGTTATTCATTGTCATTTGAGCCCAGCACGCATCCTCCTAGACCGCAATTTAGTCGCAAAAATCACAGGCTTTGGGCTTCAAGAGTGTAACGATGATAACATCGAATGCAATGTCGAGGAAGATTTACGCGCTGTAGGGGTTTTATTGATGCAGCTATTGACTGGAAGAAATTGGGCTGGGCCCATTGAGGAGCTCATGACAATGGACATGGATAGAGAAACATTGGTTAACATTCTTGATGACATGGCAGGACAATGGCCATTGGATCTAGCAAAAGAACTTGTGAGCCTGGCTATGACTTGCATGTCCATGAAAAGCAAACCCCACCTAAATCTAAGTATTGCAAAGGTCATAGAAGAACTCAATAAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAAAGAAGATAGAAAGATAACCATTGGTGGATGTATAGATAGAGAAGGTTCTAGTGATGTGCCTAGTGTTTTCCTTTGCCCTATACGACAGGAGATTATGAAAAATCCACATGTGGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAACAGTGGTTGCATTCAGGACATGATACATCACCAATGACAAACTTAAGGCTCAAACACACATCCCTTACACCAAATTACACTCTCCGTTCCTTTCTTGAAGAATGGCAAAGCAACAAATCAGCTAAAATTGCAAATTAA 2418 0.39 MDATQKEKIYVAISDDARDGFITLNWALKKWNSHPISIVILHVTHSSSKDYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYIAFCGKVSVEILEIEKFDEPMQKHVVDMTNELEITKLVMGFSFMKPSLKSKGAISGLFYVHQHKPSSCELFIICGGKQVFLRGNNDEKIMEDDSGVMVAKMKDKVTFKDWLDKMLSDKTSDYSHNRLSGSPSSTNLVQNQWEFYLQDRENYYQELLLSSSNLEEGICVQENDELHVGTKIGPLVIELNKSNKNTAEKIEILGKTAELKRKETRENIERRTKAEWAISLCKSRAEELEGRIREEVSTKENRNKELHLEKEQREEMRTEIKERKQRMNSLLELQSELSNKLQISTISRSRAETQVERAVRERTDMVREIEELRKQRDVLNRRIEFCKQKDAIGMAARLGDNGGTSCGMREYSEEELRLATDNFSERLRLKCGREWTNVYRGRFNHSTVAIKIMTSFASLSKEDFQSKVRFFGDIRHPHLVAVVGFCSEPKYVVFEYMGNGSLQDMLFTRRRNRGLRWHDRIRIATEVCSGLGFLNSSQQRSVIHCHLSPARILLDRNLVAKITGFGLQECNDDNIECNVEEDLRAVGVLLMQLLTGRNWAGPIEELMTMDMDRETLVNILDDMAGQWPLDLAKELVSLAMTCMSMKSKPHLNLSIAKVIEELNKIRRKGDEIVAKEDRKITIGGCIDREGSSDVPSVFLCPIRQEIMKNPHVAADGFSYELEAIEQWLHSGHDTSPMTNLRLKHTSLTPNYTLRSFLEEWQSNKSAKIAN 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08858 805 Pfam Protein tyrosine and serine/threonine kinase 470 609 IPR001245 GO:0004672|GO:0006468
Vifa1g08858 805 Gene3D Phosphorylase Kinase; domain 1 435 531 - -
Vifa1g08858 805 Gene3D Transferase(Phosphotransferase) domain 1 533 711 - -
Vifa1g08858 805 Coils Coil 334 368 - -
Vifa1g08858 805 CDD RING-Ubox_WDSUB1-like 730 785 - -
Vifa1g08858 805 PANTHER OS02G0152300 PROTEIN 9 793 - -
Vifa1g08858 805 SMART Ubox_2 732 795 IPR003613 GO:0004842|GO:0016567
Vifa1g08858 805 Coils Coil 383 424 - -
Vifa1g08858 805 ProSiteProfiles U-box domain profile. 728 802 IPR003613 GO:0004842|GO:0016567
Vifa1g08858 805 Pfam U-box domain 729 800 IPR003613 GO:0004842|GO:0016567
Vifa1g08858 805 SUPERFAMILY Protein kinase-like (PK-like) 442 686 IPR011009 -
Vifa1g08858 805 SUPERFAMILY RING/U-box 726 800 - -
Vifa1g08858 805 ProSiteProfiles Protein kinase domain profile. 447 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08858 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 804 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08858 Vifa-Chr1 1403008917 1403012321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08858 3 805 U-box Gene Family AT5G65500 46.154 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa1g08858 PK_Tyr_Ser-Thr 1.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08858 - - gmx:100786771 1145.95