Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08857 ATGAATGATGATGATAATCACAAAACATCCACGTTGGATCTTAATCTTCAACTTGGATTAGGATTTCATGTGGAAAAAAATGTGAGCAAATCATTGGTTAATTCAAAAAATGATTTAGCCTTTGAGTTGAGTTTGAAGAGAGGCTATGCTGATGAACAAGTTGAAGAAGAAGATGAAGAAATTGCTATTAACACCACCAATGACAGGAACGGGTGCACAAAGAAATTGAGGCTTACAAAGGAGCAATCTACCATGCTTGAAGATGCTTTCAAGCTTCATAACACCATCAACACTGCTCAAAAACGGGCACTTGCTGAGAAATTGAATTTAAAGCAAAGACAGGTTGAGGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGCTGAAACAAACCGAAGTAAACTGCATATTCCTAAAGAAATGTCATGACAAACTAAGTGAAGAAAATCTCAAGCTGAAGAGGGAATTAGTAGAGTTACGTGCATTAAAAGTTGGTGCACCAAACACAAGTCAATCATCCTCTAAAGGTGCAGATTGGAACATTTGTTCATCATGCAAGAAAATATGGAAACCCAATGAAGAAGAAGATGTGGTTAGAAAGAGCAGCCATAGCACCATAGAGTTAGATTAG 630 0.373 MNDDDNHKTSTLDLNLQLGLGFHVEKNVSKSLVNSKNDLAFELSLKRGYADEQVEEEDEEIAINTTNDRNGCTKKLRLTKEQSTMLEDAFKLHNTINTAQKRALAEKLNLKQRQVEVWFQNRRARTKLKQTEVNCIFLKKCHDKLSEENLKLKRELVELRALKVGAPNTSQSSSKGADWNICSSCKKIWKPNEEEDVVRKSSHSTIELD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08857 209 CDD homeodomain 74 130 IPR001356 GO:0003677
Vifa1g08857 209 Gene3D - 78 126 - -
Vifa1g08857 209 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Vifa1g08857 209 SMART HOX_1 71 133 IPR001356 GO:0003677
Vifa1g08857 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 194 - -
Vifa1g08857 209 SMART halz 129 172 IPR003106 GO:0006355|GO:0043565
Vifa1g08857 209 Pfam Homeodomain 75 127 IPR001356 GO:0003677
Vifa1g08857 209 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Vifa1g08857 209 Coils Coil 142 162 - -
Vifa1g08857 209 SUPERFAMILY Homeodomain-like 65 130 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08857 Vifa-Chr1 1402630247 1402632090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08857 38 192 Homeobox Transcription Factor Family AT4G17460 49.677 1.05e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa1g08857 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08857 K09338 - lang:109339930 181.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04405 4 1391591903 1391592837 Vifa1g08857 1 1402630247 1402632090 PCT