Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08851 ATGGCTCGTGCAAGTACTACTTCTTCTACTAACCCGAATAACTGGCTATCGTTTTCACTCTCACCTATGGAAATGCCTCAGTTTGTTCAATACGACGCCGCTTCATCTGTTACTAACTCATCTCATCAAAATCATCACTATTTTCTTGACAATATGTATACCAATGGGTGGGGTAACGGAAACTCAAAGTCTGAAGCTGAAGTTCAAGAACAATCGATTTGGTTTATGGATTCATCTAACGGTGTGAACCACCACGCTCCACCGCCGAAGCTGGAGGATTTTCTCGGTGACAGTCAAACGGAGACGCAAGATTCTTCTCTTACACACATGTACGATCACCATCAGCACCACCAACAACAAAATCATCATGGTTCTACTTACTTCGGTGGGGACCACCACCATCAACAACACCAACACCAGCACCATCAGCAACAGCAACAGACTCAGCATCAGCATCAGGATCTTAAGAGCATTACTGGCTTTCAAGCTTTTTCAAACAACTCAGGTTCTGAAGTTGATGATTCTGGTTCAATAGGAAAATCGCAAGCTGCATGTAACGAGTTTGGAACTCATTGCGTTGAGTCAGGTAACGAGTTCGTTTACTCCACCGCCGCCGCAACCGCTAGTGGTGCTTTGTCGCTCGGAGTTGCTCAGAGTTCTGAGGAAACTGCTATCGTCGTTGCTGATTCAGATAGCTCGAAGAAAATCGTTGATACTTTTGGTCAGCGAACCTCGATTTACCGTGGTGTGACTAGGCATAGATGGACAGGTAGATATGAAGCCCATCTATGGGATAATAGCTGTAGAAGAGAAGGTCAAGCCAGGAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTACTGGGGTCCTACTGCTACTACCAACTTCCCTGTTTCCAATTATGCAAAGGAATTGGAAGAGATGAAAGTTGTAACAAAGCAAGAATTCATTGCGTCATTGCGAAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCCATCTATAGGGGTGTTACTAGGCATCACCAACAGGGTAGGTGGCAAGCAAGAATCGGCCGTGTTGCCGGAAACAAAGACTTGTACTTGGGAACATTCGCAACTGAAGAAGAGGCGGCTGAAGCATACGACATTGCAGCCATCAAATTCCGAGGTGCAAATGCTGTAACAAACTTTGAGATGAACAGATATGATGTGGAAGCTATCATGAAGAGTTCTCTTCCTGTCGGCGGGGCAGCAAAACGCTTGAAGCGTTCTCTGGAATCCGAACAGAAAGCCGCTGTCACTAACAACATTCAGCAGAACAATCCTCAGCAGTGTGCAGTTAACACCAATAACAGCAACAGCAACAACATCAATTTCTCAGCCATTCATCATCATCAGCTGCAGCCAATCACTTCAATCCCTTATGGAATTCCATATGATTCAAACACAGCTTACTATCATCACAACCTCTTCCAACATTTTCATCCTAATTCCAATGATGGCACTGCAGAATCTGTTGTTACTTCCACCAATGCAGCAAATGGTGGAGGACTCAATGCTATGCCACCAACATCAGCAGCTGAGTTCTTTTTATGGCCTAATCAGTCTTACTGA 1638 0.4487 MARASTTSSTNPNNWLSFSLSPMEMPQFVQYDAASSVTNSSHQNHHYFLDNMYTNGWGNGNSKSEAEVQEQSIWFMDSSNGVNHHAPPPKLEDFLGDSQTETQDSSLTHMYDHHQHHQQQNHHGSTYFGGDHHHQQHQHQHHQQQQQTQHQHQDLKSITGFQAFSNNSGSEVDDSGSIGKSQAACNEFGTHCVESGNEFVYSTAAATASGALSLGVAQSSEETAIVVADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKVVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKAAVTNNIQQNNPQQCAVNTNNSNSNNINFSAIHHHQLQPITSIPYGIPYDSNTAYYHHNLFQHFHPNSNDGTAESVVTSTNAANGGGLNAMPPTSAAEFFLWPNQSY 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08851 545 ProSiteProfiles AP2/ERF domain profile. 246 312 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 FunFam AP2-like ethylene-responsive transcription factor 347 408 - -
Vifa1g08851 545 CDD AP2 245 314 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 PRINTS Ethylene responsive element binding protein signature 247 258 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 PRINTS Ethylene responsive element binding protein signature 388 408 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 SUPERFAMILY DNA-binding domain 347 407 IPR016177 GO:0003677
Vifa1g08851 545 Gene3D AP2/ERF domain 348 408 IPR036955 GO:0003700|GO:0006355
Vifa1g08851 545 Gene3D AP2/ERF domain 246 314 IPR036955 GO:0003700|GO:0006355
Vifa1g08851 545 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 475 - -
Vifa1g08851 545 SMART rav1_2 348 412 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 SMART rav1_2 246 318 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 FunFam AP2-like ethylene-responsive transcription factor ANT 245 314 - -
Vifa1g08851 545 ProSiteProfiles AP2/ERF domain profile. 348 406 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 CDD AP2 347 406 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 Pfam AP2 domain 246 304 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 Pfam AP2 domain 348 398 IPR001471 GO:0003700|GO:0006355
Vifa1g08851 545 SUPERFAMILY DNA-binding domain 245 314 IPR016177 GO:0003677
Vifa1g08851 545 MobiDBLite consensus disorder prediction 79 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08851 Vifa-Chr1 1400943349 1400947504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08851 89 545 AP2-EREBP Transcription Factor Family AT5G10510 55.916 9.88e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa1g08851 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08851 K09285 - gmx:100775390 711.835