Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08850 ATGGGACAACCTTTGAATACTTCTCCCACTTTTTTCTTCTTCTTTTCTCAACATAGAAACAAGAAACAAAATCTAGCTACTCCTAATGAGTCAAAGATGAAGTCAAGTGAGAACAAACGTGAAACAATGTTGCTTGTTCTTGGTGGGATAGTAGTTGTCATCATAGTATTGATTCTTTGTTGGATTTTCTTTAGAAAGCATGTTAAACGATCAGAAAAACCAGCTCCAAATGAAGCTGAGCCTACAGCTGCTATGAAGACGATATTTCCATCGGTACAACAATCATCAGGGTCCATGGATTTATTTAGTATGAGTCTTAGGTCAATTAGCTACTTCGACTACTACACTTTGAGAAAGGCAACCAATAACTTTTTTCATGGTAATCTTCTTGGAAGCGGTGGATTTGGGCCTGTCTATCAGGGAAAGTTGGAAGATGGAAGAATGATAGCTGTTAAGGCATTGTCTCTTAACAAATCTCAACAGGGAGAAAGAGAATTTTTAGCAGAAGTGAAATTGATCACAAGTATGCAACACAAAAATTTGGTTCGTCTTCTCGGAAGTTGCATTGATGGACCTCAAAGGATACTTGTATACGAATACATGAAAAATCGAAGTTTAGACCTCTTCGTATATGGAAACAATGATCGATTTCTGAATTGGAGCACTAGGTTTCAAATAATACTCGGAGTAGCGCGGGGACTACAATATCTTCACGAAGATTCACACTTAAGAGTCGTTCATCGCGATATCAAAGCAAGCAATATTCTTTTGGACGACAAATTTTTGCCAAAAATCGGAGATTTCGGACTAGCAAGGTTTTTTCCAGACGATCAAGCTTACCTTAGCACACAATTCGCAGGAACATTAGGCTATACGGCTCCAGAATATGCTATTAGAGGGGAATTATCAGTAAAAGCTGATACCTATAGTTTTGGAGTTCTTCTTCTTGAGATTATATGTTGCAGAAAAAACACAGATCATACTTTACCACCAGAAATGCAGTATCTTCCTGAATATGCTTGGAAATTATACGAGAAATCGAGTTTATTGGATCTTGTGGATCCAAAGCTGAAACAAGATGGATTTGTGGAAAAGGATGTTATGCAAGCAACTCATGTGGCTCTCTTATGCCTTCAGCCTCATGCACATTTGAGACCACCAATGTCAGAAATTGTGGCATTGTTGACATTCAAAATTGAAATGGTTACAACGCCGATGAGGCCGGCGTTTCTTGATCGAAGGCCCCGGAAGGATGAAGATAACCATTCTTTTGAAGCATCATAA 1284 0.3855 MGQPLNTSPTFFFFFSQHRNKKQNLATPNESKMKSSENKRETMLLVLGGIVVVIIVLILCWIFFRKHVKRSEKPAPNEAEPTAAMKTIFPSVQQSSGSMDLFSMSLRSISYFDYYTLRKATNNFFHGNLLGSGGFGPVYQGKLEDGRMIAVKALSLNKSQQGEREFLAEVKLITSMQHKNLVRLLGSCIDGPQRILVYEYMKNRSLDLFVYGNNDRFLNWSTRFQIILGVARGLQYLHEDSHLRVVHRDIKASNILLDDKFLPKIGDFGLARFFPDDQAYLSTQFAGTLGYTAPEYAIRGELSVKADTYSFGVLLLEIICCRKNTDHTLPPEMQYLPEYAWKLYEKSSLLDLVDPKLKQDGFVEKDVMQATHVALLCLQPHAHLRPPMSEIVALLTFKIEMVTTPMRPAFLDRRPRKDEDNHSFEAS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08850 427 CDD STKc_IRAK 130 396 - -
Vifa1g08850 427 Pfam Protein tyrosine and serine/threonine kinase 128 393 IPR001245 GO:0004672|GO:0006468
Vifa1g08850 427 SUPERFAMILY Protein kinase-like (PK-like) 98 398 IPR011009 -
Vifa1g08850 427 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 201 405 - -
Vifa1g08850 427 SMART serkin_6 124 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08850 427 Gene3D Phosphorylase Kinase; domain 1 86 200 - -
Vifa1g08850 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Vifa1g08850 427 FunFam Cysteine-rich receptor-like protein kinase 10 88 200 - -
Vifa1g08850 427 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 421 - -
Vifa1g08850 427 ProSiteProfiles Protein kinase domain profile. 124 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08850 427 Gene3D Transferase(Phosphotransferase) domain 1 201 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08850 Vifa-Chr1 1400730291 1400732441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08850 100 424 Receptor kinase-like Gene Family AT1G56120 46.462 1.29e-98 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g08850 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08850 - - cam:101498319 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08850 1 1400730291 1400732441 Vifa1g08850 1 1400730291 1400732441 ECH