Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08840 ATGTCCATGACACCAACTTATCGTTATTCACTATCTTCTCCTCCTATGCCTTTTGATCTTACTAACAATGAAGATCACAATCATCATCTCTTCAATACAAATATTCATCAACCCTCTTCTTCATCTTCTTTTTCATATTCCACACTTTTCCACCAAAATCAAGATCAAGCACACTCTTATTCTTCTGAACCAAATCACATACAAAGTGATACAGAGGTTGCGAAGCTGGTTCCTTCTTGTGGATCAGGATCATGTGATCGTCAAGAAGTAAAGAAAGACAACGGGAATGAAGAATTTGAAGCCGAGGATAGTGGTTCAATGAAGTGGATGCCATCAAAGAAGAGAATAATTAAGAGAATGATGGAAGATCAAAGGGTTTCTGAGCACAAATTTGAAAAAGAAAAAATATTATTACGTGTAGAAACCGATAATAGTAGCAACAACAATGGCTCAAACAACAGTAATATGATTGTTAGGGTTTGTAGTGATTGCCACACAACTAAGACCCCTCTATGGAGAGGTGGACCAGCAGGCCCTAAGTCTCTCTGCAATGCCTGCGGGATTCGACAAAGAAAAGCGCGGCGCGCACTTGCCGCAGCTGCATCTGCAGATGATGAGATTCACGTGGCTTCTAAGAAACCCTATGTGAAGGGAAAGAAGTTGCAAATCAAAAGGAAAAGGTCAAAAACTGATGAATGTGCACCACCACATTTGAAAAAGAAGGGTAAAACCGGAAACAGTTGCACTAGTTTTGAAGATTTGATAACAATTTTGAGTAACAACTTGGCTTCTCATCAAGTTTTTCCTCAAGATGAGAAAGAGGCTGCTATTCTACTCATGGCTTTGTCTTATGGCTTACTTCATGAATTTGATTCCTAA 879 0.3925 MSMTPTYRYSLSSPPMPFDLTNNEDHNHHLFNTNIHQPSSSSSFSYSTLFHQNQDQAHSYSSEPNHIQSDTEVAKLVPSCGSGSCDRQEVKKDNGNEEFEAEDSGSMKWMPSKKRIIKRMMEDQRVSEHKFEKEKILLRVETDNSSNNNGSNNSNMIVRVCSDCHTTKTPLWRGGPAGPKSLCNACGIRQRKARRALAAAASADDEIHVASKKPYVKGKKLQIKRKRSKTDECAPPHLKKKGKTGNSCTSFEDLITILSNNLASHQVFPQDEKEAAILLMALSYGLLHEFDS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08840 292 SMART GATA_3 155 207 IPR000679 GO:0006355|GO:0043565
Vifa1g08840 292 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g08840 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 194 - -
Vifa1g08840 292 ProSitePatterns GATA-type zinc finger domain. 161 186 IPR000679 GO:0006355|GO:0043565
Vifa1g08840 292 ProSiteProfiles GATA-type zinc finger domain profile. 159 191 IPR000679 GO:0006355|GO:0043565
Vifa1g08840 292 FunFam GATA transcription factor 21 155 233 - -
Vifa1g08840 292 MobiDBLite consensus disorder prediction 1 24 - -
Vifa1g08840 292 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 3 289 - -
Vifa1g08840 292 Gene3D - 157 244 IPR013088 GO:0006355|GO:0008270
Vifa1g08840 292 MobiDBLite consensus disorder prediction 80 106 - -
Vifa1g08840 292 Pfam GATA zinc finger 161 194 IPR000679 GO:0006355|GO:0043565
Vifa1g08840 292 MobiDBLite consensus disorder prediction 86 106 - -
Vifa1g08840 292 CDD ZnF_GATA 160 188 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08840 Vifa-Chr1 1398917651 1398918759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08840 91 288 C2C2-Gata Transcription Factor Family AT4G26150 37.991 1.42e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa1g08840 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08840 - - psat:127136613 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04400 4 1388991737 1388993073 Vifa1g08840 1 1398917651 1398918759 PCT