Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08835 ATGAAGCAGTTGATTCGTCGGTTATCCCGAGTCGCCGACTCCTCAACCTACACTCTTCTCCGAACAGACTCATCAACAACTCGTCGCCGGCGACCTTCCCGCCGAGTCGAATCGTTCCGGATCCGGAGATCTTCCACGGTTGTTCCGGAAGGCCATGTTCCGATCTATGTAGGAGACGAGATGGAGAGATTCGTCGTGAGTGCAGAGCTTCTGAACCATCCGATTTTCATCAAGCTTTTGAACGAATCGGCGCAGGAATACGGTTATGAACAGAAAGGAGTTCTTCGATTACCGTGTCATGTTTTCGTATTTGAGCGCGTGCTTGACGCGCTCAAACATGGACATGACACGCGTTATATCGCCGAGCTTCTCAATTCTGAAGGAGAAGAAGAAAGATTCTGCTCATGA 408 0.5 MKQLIRRLSRVADSSTYTLLRTDSSTTRRRRPSRRVESFRIRRSSTVVPEGHVPIYVGDEMERFVVSAELLNHPIFIKLLNESAQEYGYEQKGVLRLPCHVFVFERVLDALKHGHDTRYIAELLNSEGEEERFCS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08835 135 Pfam Auxin responsive protein 7 111 IPR003676 GO:0009733
Vifa1g08835 135 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 35 107 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08835 Vifa-Chr1 1398259222 1398259629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08835 45 120 Calmodulin-binding Proteins AT4G31320 38.158 1.69e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08835 K14488 - gmx:100793103 166.392