Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08830 ATGGATGATTTCGGTGAAAAGTATTTCTACCTAGTGAACGGATGCAAATACAGAGTATGGCCAGCTTCCTCTTCTACCGCTGGAAACACACATCTTGAAATAGGCAACTTCAGTTTAAACACGGGCGACGAGTTCAAAGTTTGGGCTCCTTCGACTTGGAGCGGCCACATTTGGGGCCGAACTCGCTGCATTAATAATTTATCCACGGGAGGAAACTTCTCATGCATTACCGGCGATTGCGGTACTGGGAAGCAGTCATGCGATGGGATGCGAGGCCTGCCGCTCGCCACGCTAGCAGAATTCCGTTTAAGCAACAACAGTGGTGCTCATTTTTATAACATTAGTGTTATAGAAGGTTTCAATATCCCTATAGAGGTGACTACTATGGGTGCTTCTTGTGGGTACCAGAATCGCAATGGGACAAACACGTTTACTTGTTCATTTAATGTTTACAAGATCATGTTTTGCCCAGCTTTCAGCACGGGAACTTTCGATCAGAGTGTGAGTGTAGGTGAGTCACTCACTGCTGGCAATGGGACAGATCGATGGCTTTCTCTTTCGGGAGAGTTTGCTTTTGGATTTTATCAACTTCCTAATGATCTTTTCTTACTAGCTATATGGTATGAAAAGATAAATAGTACTGATTCTATTATTTGGTATGCAAAAGGTGACAATCCTATTCCAAATGGATCAAGATTAGTATTAAATGACTCTCATGGGTTGATGCTTTCCAACCCTCAAGGTTTAGAGTTATGGAGATCATCCTATTTTACTTCAAGTAGAGTTTCAATTGGTCTAATGAAGGATGATGGAAATTTTCAATTATTAGACCAAAATAAGGTTATATTATGGAAGAGTTTCAGTGATTCTACCGACACATTAGTTCCTGGTCAAGAATTGAATTCAAATAGCTACCTATATTCTCGAAAAGGAGAATTCAACTTCTCACGTGGAATGTTTGAACTTTCTTTACAGAAAAATGGGCATGGTTTACTCCTTAACCATGTAAATTTTCCTACAAAGACATACTACAGTACTCATAGTGGCGTTTTCAATGAAAGTGGTGTTGTTGATCCAAATAATGGTGACAAATTGATATTTGACAACTCACTCTTCTACTTATACATACTTAAAAGGAATGGAGGAAAAATTTCTATCACCGATCCAAAAGATTATGTTTCAAATAATGCATACTACTACAAAGCCACTATCACTTATGATGGTGTTTTTACCCTCTCATATCACCCTAAATATCAAAACAATAGTCAAGGATGGGTAATTGAAAAGACAATCCCAGAAAACATTTGTTTGGATTCTACATTCAACAAAGGTCCTGGTGTGTGTGGGTTGAATAGCATTTGCACCCTCATAAACCAAAGGCCAGTGTGTACATGTCCAGAAGGATATTCTCTAATGGACTCAAATAACATTTATGGTGGTTGCATACAAAATTCCCACGTCACTTGTCAAGGTAGGAATCAAGGGTCCCAAAATGATACACATGTGATGATGAAAATTCCTGAAACTTATTGGCCTTATTCTGACTATGAAACAAAGAGGCATAGTAGCTTACAAGATTGCACAGATTCTTGTTTGAAAGACTGCTTATGTGCATTGGTATTTTTCAATGAAAGTTCTTGTTTGAAGAAGAAACTACCACTCTCACATGGGAGAAAGGATATCTCAATACAAGGAATTTCTATCATGAAAATGAGAAAAAATGATACTCTACACTCCCCTCCCAATTTGATGAAAGGTAATGGTACTTTGATCAATGTGATGTCAATTATTTTTGGATTCTCCATTGCTATAGTTATAACATTGGTTGGTGCAATTTTTTATTGGTACAACTCAAAGAAGATAAAAAGTAGCACAATCAATAAAAGAGTTGTTGATAGAAGTTTGAGAATATTTTCTTTCAAGGAAATTACACAAGTAACAAACAATTTCAGGGAAGAATTAGGAAGAGGGTCTTGTAGCATTGTATACAAAGGAATGGTAGATGTGGATACTTATGTTGCAGTAAAAAAACTGGACAAGTTGTTTCAAGATAGTGATAAGGAATTTCAAACTGAAATGAATGTCATAATCAAAACTCATCATAGGAACCTTGTACGTCTTCATGGGTATTGTAGCGAAGATCAACACAGGATTTTGGTGTATGAGTTAATGAGTAATGGTACTTTAGCAACATTTCTTTTCACACCTTTGAAACCAAACTGGAACCAACGAGTTCAAATTGCCATTGGGATTGCAAGAGGTCTTGTTTACTTGCATGAAGAATGTTCCACCCAAATAATCCACTGTGACATAAAGCCACAAAACATTCTTCTTGATGATGACTACAATGCCAGGATTTCCGATTTTGGGTTAGCAAAACTATTATTGATTAATCAAAGTCACACAAAAACCGGAATCAGAGGAACCAAAGGTTATGTTGCACCAGATTGGTTTAGGAGTGCACCTATCACTTCTAAGGTTGATGCTTTTAGTTTTGGTGTGTTGTTACTAGAGATAATTTGTTGTAGGAAAAATGTAGAGGATGATACTGTCAGTGAAGAAAAAAGGATTTTAATTGATTGGGCATATGATTGCTACAAGACTGGAAAAATAGACGTTCTTTTAGAAAATGAACATGGGACAGTCAATGATATGAGTATATTTGAAAATTTTATCATGATTTCTATTTGGTGCACTCAAGAAGATCCATCTCTAAGACCACCAATGAAGAAGGTTTTGTTAATGCTAGAAGGGATTGTTGAAGTTGAAATTCCTCCAAATCCCTACTTGTATGATTCTTCTAATCAAAGTTAG 2814 0.3678 MDDFGEKYFYLVNGCKYRVWPASSSTAGNTHLEIGNFSLNTGDEFKVWAPSTWSGHIWGRTRCINNLSTGGNFSCITGDCGTGKQSCDGMRGLPLATLAEFRLSNNSGAHFYNISVIEGFNIPIEVTTMGASCGYQNRNGTNTFTCSFNVYKIMFCPAFSTGTFDQSVSVGESLTAGNGTDRWLSLSGEFAFGFYQLPNDLFLLAIWYEKINSTDSIIWYAKGDNPIPNGSRLVLNDSHGLMLSNPQGLELWRSSYFTSSRVSIGLMKDDGNFQLLDQNKVILWKSFSDSTDTLVPGQELNSNSYLYSRKGEFNFSRGMFELSLQKNGHGLLLNHVNFPTKTYYSTHSGVFNESGVVDPNNGDKLIFDNSLFYLYILKRNGGKISITDPKDYVSNNAYYYKATITYDGVFTLSYHPKYQNNSQGWVIEKTIPENICLDSTFNKGPGVCGLNSICTLINQRPVCTCPEGYSLMDSNNIYGGCIQNSHVTCQGRNQGSQNDTHVMMKIPETYWPYSDYETKRHSSLQDCTDSCLKDCLCALVFFNESSCLKKKLPLSHGRKDISIQGISIMKMRKNDTLHSPPNLMKGNGTLINVMSIIFGFSIAIVITLVGAIFYWYNSKKIKSSTINKRVVDRSLRIFSFKEITQVTNNFREELGRGSCSIVYKGMVDVDTYVAVKKLDKLFQDSDKEFQTEMNVIIKTHHRNLVRLHGYCSEDQHRILVYELMSNGTLATFLFTPLKPNWNQRVQIAIGIARGLVYLHEECSTQIIHCDIKPQNILLDDDYNARISDFGLAKLLLINQSHTKTGIRGTKGYVAPDWFRSAPITSKVDAFSFGVLLLEIICCRKNVEDDTVSEEKRILIDWAYDCYKTGKIDVLLENEHGTVNDMSIFENFIMISIWCTQEDPSLRPPMKKVLLMLEGIVEVEIPPNPYLYDSSNQS 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08830 937 Pfam Protein kinase domain 651 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08830 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Vifa1g08830 937 Pfam Thaumatin family 13 136 IPR001938 -
Vifa1g08830 937 SUPERFAMILY alpha-D-mannose-specific plant lectins 202 343 IPR036426 -
Vifa1g08830 937 PRINTS Pathogenesis-related protein signature 110 126 IPR001938 -
Vifa1g08830 937 PRINTS Pathogenesis-related protein signature 56 67 IPR001938 -
Vifa1g08830 937 PRINTS Pathogenesis-related protein signature 8 20 IPR001938 -
Vifa1g08830 937 ProSiteProfiles Protein kinase domain profile. 648 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08830 937 ProSitePatterns Thaumatin family signature. 71 87 IPR017949 -
Vifa1g08830 937 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 174 927 - -
Vifa1g08830 937 SUPERFAMILY Protein kinase-like (PK-like) 629 917 IPR011009 -
Vifa1g08830 937 FunFam S-receptor-like serine/threonine-protein kinase 617 723 - -
Vifa1g08830 937 Gene3D Phosphorylase Kinase; domain 1 612 723 - -
Vifa1g08830 937 PIRSF SRK 140 937 IPR024171 GO:0004674
Vifa1g08830 937 ProSiteProfiles Bulb-type lectin domain profile. 159 288 IPR001480 -
Vifa1g08830 937 SUPERFAMILY Osmotin, thaumatin-like protein 8 157 IPR037176 -
Vifa1g08830 937 Gene3D - 290 440 - -
Vifa1g08830 937 SMART tha2 9 157 IPR001938 -
Vifa1g08830 937 ProSiteProfiles Thaumatin family profile. 9 161 IPR001938 -
Vifa1g08830 937 Pfam D-mannose binding lectin 217 304 IPR001480 -
Vifa1g08830 937 CDD B_lectin 165 287 IPR001480 -
Vifa1g08830 937 Gene3D - 162 289 IPR036426 -
Vifa1g08830 937 SMART serkin_6 648 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08830 937 SMART blect_4 165 290 IPR001480 -
Vifa1g08830 937 Gene3D Transferase(Phosphotransferase) domain 1 724 924 - -
Vifa1g08830 937 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 724 924 - -
Vifa1g08830 937 Gene3D Thaumatin 8 157 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08830 Vifa-Chr1 1395809591 1395812523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08830 611 918 Receptor kinase-like Gene Family AT1G60800 39.875 2.29e-71 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g08830 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08830 - - mtr:25487002 1030.01