Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08829 ATGGCGTCGAACAAGATCGAACGGGGTCACCAGATGTACCGTGACGGAGTCTACAAAGAGGCGTTAGGGTTCTACACGGAAGCCATCGCTATGGCCAAGACGAATCCACAGAAGATCGCTTTGCATAGTAATCGTGCTGCCTGTTTCCTTAAGCTTCATGATTTCAAGAAGGCAGCAGCAGAATGTACCTCGGTGCTTGAACTTGATAGCAATCACAGTGGAGCATTGATGTTGCGGGCTCAAACACTGGTGACCCTGAAGGAGTACCATTCTGCACTTTTTGATGTCAACAGACTCTTGGAGTTGAATCCATCCTCCGAGGTCTATCAAAACCTTCACGCACGCTTGAAGACACAGTTGTCTCTTACTCCAATACCTGAGTCAGAAGAGGAGTTTGAGGAACAGGAAGATGAGAAGGATGAGGTGATGGGAAAAGGTGAGCAAAAGAAGGAAGAAATCGGACAGAAACATGCGGCAGCTTCTAATGTTAGGATAGATCATAAGGTTGAGCCTGGCAAAGCTAAAGAAGCAGACCCCAAGTTTTCATCCATACAGGGAAGAGACCAAAACTATGAGCCTAAAAAGTCAACGGAAGAGCTTAAAATTCCGAGAGCGCTAAACAACGAATCAACAGAGCAAGGATGGCAAACAATTCCAAAACCAAAAGGACATTCAGCTCTGGACTATGCACGGTGGGACAGTGTTGACAATGATTCTAGCGAAGATGATGAAGATGAAGACGATGAATCTTTTCCCCAGTACCGTTTTCGTGTGAAAACAATTGGTGTACGTCCTGTGAAATGA 804 0.4565 MASNKIERGHQMYRDGVYKEALGFYTEAIAMAKTNPQKIALHSNRAACFLKLHDFKKAAAECTSVLELDSNHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLSLTPIPESEEEFEEQEDEKDEVMGKGEQKKEEIGQKHAAASNVRIDHKVEPGKAKEADPKFSSIQGRDQNYEPKKSTEELKIPRALNNESTEQGWQTIPKPKGHSALDYARWDSVDNDSSEDDEDEDDESFPQYRFRVKTIGVRPVK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08829 267 MobiDBLite consensus disorder prediction 139 182 - -
Vifa1g08829 267 MobiDBLite consensus disorder prediction 122 254 - -
Vifa1g08829 267 SMART tpr_5 2 35 IPR019734 GO:0005515
Vifa1g08829 267 SMART tpr_5 73 106 IPR019734 GO:0005515
Vifa1g08829 267 SMART tpr_5 39 72 IPR019734 GO:0005515
Vifa1g08829 267 SUPERFAMILY TPR-like 6 120 IPR011990 GO:0005515
Vifa1g08829 267 Pfam Tetratricopeptide repeat 51 116 - -
Vifa1g08829 267 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 267 - -
Vifa1g08829 267 Gene3D Tetratricopeptide repeat domain 1 155 IPR011990 GO:0005515
Vifa1g08829 267 Coils Coil 125 152 - -
Vifa1g08829 267 MobiDBLite consensus disorder prediction 203 218 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08829 2 120 Calmodulin-binding Proteins AT3G25230 34.351 6.11e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08829 - - gmx:100792046 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08829 1 1395727652 1395729008 Vifa1g08829 1 1395727652 1395729008 ECH