Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08818 ATGGAACCCATGGATATAGTTGCAAAATCAAAGGAAGATGCTTCGCTTCCTAAAGCGACGATGACAAAAATTATTAAAGAGATGTTACCACCAGATGTGCGTGTTGCAAGAGATACTCAGGATTTATTGATTGAATGCTGTGTAGAGTTCATCTCATCAGAGTCAAATGAAGTATGTAACAGAGAGGAAAGAAGGACTATTGCACCTGAGCACGTATTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTACGCAGCATATGAACAGCACAAAATGGAGACAGTGCAGGACTCTGTAAAAGGTGCCAAGTGGAGCGGTGCAGCTGAGATGACAGAGGAACAAGCATTAGCAGAACAGCTTCTGTTCATCTACCATCATTAA 396 0.4217 MEPMDIVAKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFISSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKMETVQDSVKGAKWSGAAEMTEEQALAEQLLFIYHH 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08818 131 PANTHER PROTEIN DR1 HOMOLOG 1 124 IPR044255 -
Vifa1g08818 131 FunFam Negative cofactor 2 beta 6 130 - -
Vifa1g08818 131 Gene3D Histone, subunit A 4 127 IPR009072 GO:0046982
Vifa1g08818 131 SUPERFAMILY Histone-fold 12 124 IPR009072 GO:0046982
Vifa1g08818 131 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 76 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08818 Vifa-Chr1 1394421542 1394421937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08818 1 124 CCAAT-DR1 Transcription Factor Family AT5G23090 81.102 6.33e-73 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa1g08818 CBFD_NFYB_HMF 1.1e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08818 K21751 - gmx:547635 227.254