Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08817 ATGGTTATGCAAATTTCTCTTGTGTTCTTCTTCACACTTCATCTATCAGTGACAGTTGTAACTTCAGCGAAGTTAACTATAATTAACCAATGCAATTACACGGTGTGGCCAGCTTCATCACCTTCCCCCGGAACCGCCGGAAACTCCGGTAACGCAACACACACGGGATTCATTTTAAAACCCGGCGAGAATTCCACAATCACAACCTCCGATAAATGGTCCGGCCGTGTATGGGGGCGGACTCTCTGCACAACAGATTCCGCCACCGGAAACTTCTCCTGCGTCACCGGCGATTGCGGCTCAGGAAAGATTGCATGTGACAATAGCGGATCAGGACCTTTGACGCTGGCAGAGTTCAGTTTGAACGGTTCCAATAATAAAGATTATTACGATGTCAGCTTAGTTGACGGTTATAACGTACCAATGAATATTGTTCCGTTGAATAGTTCAGGAAAGTGTAACATCACTGGTTGTCCTACCGATCTGAACGCGGTGTGTCCGACGGAGTTGAAGGCAATGAATAATGGAACACTCGTGGGGTGTCAGGGTCCTTGTGCTACTTTTAACTTGCAGGTTTTCTGTTGCGCTGGGAGTCATTCAACTCCGGAGACATGTGAGCCGAGTGTTTATGCTAATATTTTCAAGAAGGCGTGCCCTGCAGCCTATAGCTATCCGTATGATGATTCGACCAGCACGTTCTCATGTCCCGCGACTGATTACCACGTCGTCTTTTGTCCCGCCAATAGCACCAGCTTAAATCCAGTAGATCAAGTTGGCAGCAGTGTGAGTGTTGGTGAGTCACTTATTGCTGGTAGTGGAACAACTCGATGGCTCTCTACTTCTGGAGATTTTGCATTTGGGTTTTACCAACTTCCTGATGAGCTTTTCTTACTAGCTATATGGTATGAGAAAATACAAACTGATGCAATCATTTGGTATGCGAATGGAGATAACCCTGCACAGAAGGGGTCAAGATTGGTATTGAATGATTCTAGTGGCTTGGTGCTTACAAACCCTCAAGGTTTAGAGCTCTGGAGATCAAATTTTACATCAGGTTCAGTTTCTAAAGGTATGATGAACGATGATGGAAACTTCCAATTGCAAGACGAAAACTCTGGCGCAATATGGGATAGTTTTAGTCATCCTACAGACACATTGGTGCCTAATCAAGTAATGGAGTTAAATGGAAATCTTTCTTCACGACAAGGAGCATTCAACTTCTCACGTGGAAGGTTCAAACTTCATTTACAAGAAGATGGAAATCTTGTGCTTAACCTTATAAATTTGCCAAGCAACTACAGTTATGATCCTTACTACAGTTCTGACACTAATAGTGATGCTAAGAATCAAACAAATGTTGGCCAACGTTTGATATTTGACAGATCAGGTTTATTATACATTGAGAAAAAAGGCGGAGATAATATTTCTATCAGCAACCAGAATGGGACATTCTCAACTGATAACTTCTACTACAAGGCAACAATTAATTATGATGGAGTTTTCACCATAGCATTTTACCCTAAAGATCCAAAAAGAGGACAGAGTTGGGTCATTGCGAAGACGATACCAGAAAACATATGCTTGTATTCTACATTCACAGATGGTGAAGGTGTATGTGGGTTTAATAGCATTTGCACCCTTACAAATGACCAAAGGCCGAATTGTACCTGTCCAGACGGATATTCTCTAATTGATTCAAATAACATGTATGCTGGCTGCATACCGAATTTCCAAGTCATTTGTCAAGCAGGTGGGAACTGGGGTTCGCAAGATGATATGTATACAATGAAGGAATTGCCAAATACAGATTGGCCTAAATCTGATTATGAAATTATAAGTCCATCTAGTTTGCAAGAATGTAAGGAATCATGTTTGCAAGATTGCTTATGTGTTTTGGTTTCTTTCAACCAAAGTTCTTGCTGGAAGAAGAAGCTTCCACTATCTTATGGAAGAAATGATCAAGTAGTAAAAGGAATTTCTGTCATGAAATTGATGAAAAACGATCCTTTTTCTTCCATTTCAAATCAAAAGAAAGATCATGAAACTTTGATTATTGTAATTTCGGTTCTTTTAGGAAGCTCTATGCTTGTCATTGTGACATTACTTGGAGCAATGTTTTTTGGGTTTCCTTACAACCGCAAGAAGATAAAAAGTTGTAGAACCAACAAAAATGTTGTTGACAATAACTTGCGCAATTTTAGCTTCAAGGAAATCGTTGAAGCAACGAGTAACTTCAGAGAGGAACTTGGAAGAGGGTCTTGTAGCGTTGTGTACAAAGGAACAATAGAGATGATGGTTGATGTAGCCATTAAGAAACTTGATAAGTTGCTTCAAGATAGTGATAAGGAATTTCAAACCGAAATGAGTGTGATAGGACAAACTCATCACAGAAACCTTGTTCGTCTTCTTGGATATTGCAATGAGGGACAACATCGGATTTTGGTTTACGAGTTAATGAGCAACGGAACTTTAGCAAGCTTCCTTTTCACCTCTTTAAAACCAAATTGGAACCAACGATTCCAAATTGTTCTTGGAATTGCTAGAGGTCTTGTATACTTGCATGAAGGATGTTGCACCCAAATCATCCATTGTGATATTAAACCCCAAAATATACTTCTAGATGATCACTACAATGCTAGGATTTCAGATTTTGGGTTAGCAAAGCTATTGCTGATTAATCAGAGCCACACCGAAACTGGAATTAGAGGAACCAAAGGGTACGTTGCGCCAGATTGGTTTAGGAGTGCACCAATCACTGCAAAAGTTGATACTTATAGTTTTGGTGTATTGTTGTTAGAGATCATTTGCTGTAGGAAAAATGTAGAGAAGGAATTTGTTAATGAAGAACAAGGGATTTTAACTGATTGGGCTTATGATTGCTATAAGACTAAAAGACTTGACAATCTCTTAGAAAATGATAATGAGGTAGGAAATGACATGATGAGTTTGGAAAAGTTAGTCATGATTGTTATTTGGTGTATTCAAGAAGATCCTTCTCTTAGACCAACAATGAAGGAGGTTTTACTGATGTTAGAAGGAATCGTCGAAGTTGTTGTTCCCCGAAGTCCCTATCTTTATGGTTCTGTAAGTTGTAATTAG 3099 0.3975 MVMQISLVFFFTLHLSVTVVTSAKLTIINQCNYTVWPASSPSPGTAGNSGNATHTGFILKPGENSTITTSDKWSGRVWGRTLCTTDSATGNFSCVTGDCGSGKIACDNSGSGPLTLAEFSLNGSNNKDYYDVSLVDGYNVPMNIVPLNSSGKCNITGCPTDLNAVCPTELKAMNNGTLVGCQGPCATFNLQVFCCAGSHSTPETCEPSVYANIFKKACPAAYSYPYDDSTSTFSCPATDYHVVFCPANSTSLNPVDQVGSSVSVGESLIAGSGTTRWLSTSGDFAFGFYQLPDELFLLAIWYEKIQTDAIIWYANGDNPAQKGSRLVLNDSSGLVLTNPQGLELWRSNFTSGSVSKGMMNDDGNFQLQDENSGAIWDSFSHPTDTLVPNQVMELNGNLSSRQGAFNFSRGRFKLHLQEDGNLVLNLINLPSNYSYDPYYSSDTNSDAKNQTNVGQRLIFDRSGLLYIEKKGGDNISISNQNGTFSTDNFYYKATINYDGVFTIAFYPKDPKRGQSWVIAKTIPENICLYSTFTDGEGVCGFNSICTLTNDQRPNCTCPDGYSLIDSNNMYAGCIPNFQVICQAGGNWGSQDDMYTMKELPNTDWPKSDYEIISPSSLQECKESCLQDCLCVLVSFNQSSCWKKKLPLSYGRNDQVVKGISVMKLMKNDPFSSISNQKKDHETLIIVISVLLGSSMLVIVTLLGAMFFGFPYNRKKIKSCRTNKNVVDNNLRNFSFKEIVEATSNFREELGRGSCSVVYKGTIEMMVDVAIKKLDKLLQDSDKEFQTEMSVIGQTHHRNLVRLLGYCNEGQHRILVYELMSNGTLASFLFTSLKPNWNQRFQIVLGIARGLVYLHEGCCTQIIHCDIKPQNILLDDHYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITAKVDTYSFGVLLLEIICCRKNVEKEFVNEEQGILTDWAYDCYKTKRLDNLLENDNEVGNDMMSLEKLVMIVIWCIQEDPSLRPTMKEVLLMLEGIVEVVVPRSPYLYGSVSCN 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08817 1032 Gene3D Transferase(Phosphotransferase) domain 1 819 1019 - -
Vifa1g08817 1032 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 819 1019 - -
Vifa1g08817 1032 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 268 1020 - -
Vifa1g08817 1032 Gene3D - 382 520 IPR036426 -
Vifa1g08817 1032 CDD TLP-PA 24 245 - -
Vifa1g08817 1032 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Vifa1g08817 1032 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Vifa1g08817 1032 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vifa1g08817 1032 SMART tha2 25 246 IPR001938 -
Vifa1g08817 1032 Gene3D Phosphorylase Kinase; domain 1 708 818 - -
Vifa1g08817 1032 ProSiteProfiles Thaumatin family profile. 22 246 IPR001938 -
Vifa1g08817 1032 FunFam S-receptor-like serine/threonine-protein kinase 712 818 - -
Vifa1g08817 1032 FunFam Thaumatin-like protein 1a 23 246 - -
Vifa1g08817 1032 SMART blect_4 259 382 IPR001480 -
Vifa1g08817 1032 SUPERFAMILY Osmotin, thaumatin-like protein 24 247 IPR037176 -
Vifa1g08817 1032 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 256 380 - -
Vifa1g08817 1032 Gene3D - 255 381 IPR036426 -
Vifa1g08817 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 861 873 IPR008271 GO:0004672|GO:0006468
Vifa1g08817 1032 ProSiteProfiles Bulb-type lectin domain profile. 253 380 IPR001480 -
Vifa1g08817 1032 SUPERFAMILY Protein kinase-like (PK-like) 728 1012 IPR011009 -
Vifa1g08817 1032 Pfam D-mannose binding lectin 310 397 IPR001480 -
Vifa1g08817 1032 ProSiteProfiles Protein kinase domain profile. 743 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08817 1032 SMART serkin_6 743 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08817 1032 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Vifa1g08817 1032 CDD B_lectin 261 382 IPR001480 -
Vifa1g08817 1032 Pfam Protein kinase domain 746 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08817 1032 Pfam Thaumatin family 29 246 IPR001938 -
Vifa1g08817 1032 Gene3D Thaumatin 23 246 IPR037176 -
Vifa1g08817 1032 SUPERFAMILY alpha-D-mannose-specific plant lectins 296 443 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08817 Vifa-Chr1 1393910635 1393914042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08817 675 1016 Receptor kinase-like Gene Family AT5G45780 38.000 7.06e-70 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g08817 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08817 - - mtr:25487002 1768.44