Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08811 ATGGTGAAGCTTTTCTGGGTTAGCATTGTAATAGCACTTGTTTTCATCAAATTGGTTGATGCATATCACATCAATGAAACTGAACTCTCTATCTTAGAAGCTCATGAAGGTTATTCTTTTTCTTCCAACCTTGTGAATCAGCCTCGCATGGTGGGAATCACCTTTATTCAATCTGCTGCTGCTAAAGGAGCTGTCTGCTTGGATGGAACATTGCCTGCTTATCATTTCGTCCGCGGATACGGATCGGGAGCAAACAGCTGGATTGTTAACTTAGAGGGAGGTGCGTGGTGTAATAACGTTAGAACATGCGTTTATCGCAAGACTACACGGCGTGGATCATCAAATTTCATGGAGAAGGCGATACCTTTTACGGGAATAATGAGCAATAATCCTCGAGAGAATCCAGATTTCTTTAACTGGAATAGAGTGAAAATTCGTTACTGTGATGGTGCTTCTTTTACCGGTGATAGTGAAAATAGGGTAATTCCTGGCAATCTGATACTCAACATGCTTCTCCATCACCTCTCACCTAATAGTTTTCACATGGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTGAATGTACTTCTGAATAATGGGGTTGATACAGAATTGGCCCTTCAAACTACTGAAGAAGAAACCAATCTATACCCTATTCACATGGCTGCACGCCTCGGACTATGCAACATTCTTCAATGTTTGAATAATGGTAACTGTAACTTGGACTCGCAAACAAAACTTGGTGACACGACGTTGATGGTTTGCACAAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATTAGGAGCTGATTTGGGGATAGTAAATTCGTTTGGTCATTGCGCAACTTCAACAGCAACTTCTATTCATTGGACTAAAGAATATCAGAAAGCAGTTTTGGATATAATTAGAGCCAGAAAGGTTGTTAAGTCTAGCAATGCGTCTAGATTTTCATCTTTGTTATTCGTCACTCACGCGAATGACATAGAGGCTTTGAAAAAAGTCGTTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGAGTGGATTTTCAGCTGTCATGATATCTGCTTCAGAGGGTAGCGTGGAGGCATTCAAGTTGCTTCTTCACGCTGGAGCTGATGTAACCAATCTTAAAAACAAAGATGGTTTAACAGCTCTAGATATCATAGATTTGAAACAAAATGGTGAAGATGGTCATAAGGTGATGTTTGAATATGCACTTAAAAAGGGATGTTTGAATATTAGTACTTTAGCCGAAGCGAATACTCTTCACCGTGCAGCTTGTTATGGAGATATAAACATGGTTGAAAAACTACTAAAGGAAGGGAATTACGATGTGAATGGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCCAGAGAAAGTAATGGAGAAATGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAGAATGAAAGACATGAAACAGCACTTTTACTTGCAAGAGAAAAAAATTTGAAAGGAAATGATGCAGAGAATGTGATCATGGATGAGTTAGATAGAAGAGTAGTATTGTGTGGTGCGCGTGTGAAGAAACATACAAAATGTGGTAAAGGACTTTCATGA 1632 0.3879 MVKLFWVSIVIALVFIKLVDAYHINETELSILEAHEGYSFSSNLVNQPRMVGITFIQSAAAKGAVCLDGTLPAYHFVRGYGSGANSWIVNLEGGAWCNNVRTCVYRKTTRRGSSNFMEKAIPFTGIMSNNPRENPDFFNWNRVKIRYCDGASFTGDSENRVIPGNLILNMLLHHLSPNSFHMGRTLLHHTIICNNERALNVLLNNGVDTELALQTTEEETNLYPIHMAARLGLCNILQCLNNGNCNLDSQTKLGDTTLMVCTRYKHEKCLRVLVSLGADLGIVNSFGHCATSTATSIHWTKEYQKAVLDIIRARKVVKSSNASRFSSLLFVTHANDIEALKKVVENRNINLDEQNESGFSAVMISASEGSVEAFKLLLHAGADVTNLKNKDGLTALDIIDLKQNGEDGHKVMFEYALKKGCLNISTLAEANTLHRAACYGDINMVEKLLKEGNYDVNGFDENGYTPLMLAARESNGEMCGLLISHGAKCDIKNERHETALLLAREKNLKGNDAENVIMDELDRRVVLCGARVKKHTKCGKGLS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08811 543 SMART ANK_2a 462 491 IPR002110 GO:0005515
Vifa1g08811 543 SMART ANK_2a 428 458 IPR002110 GO:0005515
Vifa1g08811 543 SMART ANK_2a 220 249 IPR002110 GO:0005515
Vifa1g08811 543 SMART ANK_2a 357 386 IPR002110 GO:0005515
Vifa1g08811 543 SMART ANK_2a 253 282 IPR002110 GO:0005515
Vifa1g08811 543 SMART ANK_2a 182 211 IPR002110 GO:0005515
Vifa1g08811 543 ProSiteProfiles Ankyrin repeat profile. 253 285 IPR002110 GO:0005515
Vifa1g08811 543 SUPERFAMILY Ankyrin repeat 181 504 IPR036770 -
Vifa1g08811 543 Gene3D - 167 303 IPR036770 -
Vifa1g08811 543 ProSiteProfiles Ankyrin repeat profile. 357 389 IPR002110 GO:0005515
Vifa1g08811 543 ProSiteProfiles Ankyrin repeat profile. 462 494 IPR002110 GO:0005515
Vifa1g08811 543 Pfam Ankyrin repeats (3 copies) 412 493 IPR002110 GO:0005515
Vifa1g08811 543 Gene3D - 405 510 IPR036770 -
Vifa1g08811 543 Pfam Ankyrin repeat 358 389 IPR002110 GO:0005515
Vifa1g08811 543 ProSiteProfiles Ankyrin repeat region circular profile. 357 384 - -
Vifa1g08811 543 Coils Coil 337 357 - -
Vifa1g08811 543 ProSiteProfiles Ankyrin repeat region circular profile. 462 494 - -
Vifa1g08811 543 Pfam Pectinacetylesterase 47 159 IPR004963 GO:0016787
Vifa1g08811 543 PANTHER ANKYRIN REPEAT-CONTAINING 157 536 - -
Vifa1g08811 543 Gene3D - 304 404 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08811 Vifa-Chr1 1393029496 1393031605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08811 1 160 Carbohydrate Esterase AT3G05910 60.976 1.78e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08811 - - mtr:11444172 583.178