Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08805 ATGGGGATGGTTTTGCCTCTGATTCTGTTGCTCGTGAAGCTTTGTGTCATGCAAGGATCTGAAGGGTCTGTTATATCCCCATCTCCAGCATTTCTTCCTGCTGTTCATCATAATGGAGAAGCACCTGGTCCTATCCATAATGGACAGTCATGGCGAAGCAATGCATCAAGCCCTTTTGATCCACATGGGTCTGTCATATCACCATCTCCAGCAACATTACATGTGGATCTTTCGCCTAGTGAAGCACCAAGTCTTTTACGCTCAAATGGGTCTTTTGTACAACCTCCAGTTGCATTACCACCGCTTACATTAGCTCCAACTCCTGAGAAGATTAAAGGAAGCGAATCATCCATATCCATATCACCTAGTCCTAGTCCAAGCACCAAATCGTTAACTCCACCGTATAAGGCTGTTCCAGCACCATCAACTGCTGAAAGGAATTTTCCACCATCCATACAGCCAATTCCACCTCAAAGGAAAGCACCTACTTTTAGTCCTCTTATATCCTCACCAATTGCTCCAGCTCTTGTTGCAATGCCTCCTGAAATTTTGCCTAAAACTTCACCTATCAGTCAACCAATCGAACATGGCAGTTTGCCTCCTAAGGTTGATAAGAGGAATGAAAGTAAGAGTCACAATTTAGAACCAGTTTCACCAGGTCCTTTCTTGCAACCTCCAGTTGCATTACCACCTAATGCATCAGCTCCACCTCCTCAGAAGATTAAAGGAATTGAATCATCCATATCACCTAGTCCTAGTCCAAACATCAAATCGTTGTTGCCGCCATATAAGGTTGTTCCTGCACCATCAACTGTTGAAAGGAATTCGCCACCATCGATGCAACCAATTCCACCTCAAATGAAAGCACCTATTGTCAGGCCTCCTGTATCCACACCAATTGCTCCAGCTCCTTTTGCAACACCTTCTGGAAATTTGTCTATAACTTCACCTATCAGCCAACCAATTGAACACGGAAGTTTTCCTCCTACGAATGATAGGAGGAATGAAAGTAAGAGTCACAACCTAGAGCCGGTTTCACCAGCCCCAGTTGCACCACCTTCTACTGATATGCCCAAAATTTCACCATTAAGCCCTTCAACTGATAATGGAAGTTTTCCTCCTAATTCTCCCAGTACACCTACAAATAAAGGTCACGCTCCAGAAACAATTTCACCAGACGCAGCTCCTGTATTCAATTTTCCGAAATATTCGCCAGCGAATCAACCGACTGAACCTGGAAGTTTGCCTCCAACTGTCCATAAAAGGAACTCCAGCAACAGTCACACATTGGAGCCAGTTTCACAGGCCCCGGTTGCAGAACCCCCTACAAGTTTTCCAAAAAGTTCTCCAGTTAGCCAACCAACTCATCATGGAAATTTTCCACCTAATGTTCATAATAGAACTGTAGATAAGGGACATAGTCATACACCAGAGCCAGTAATGCCACCAGTAGTTGCATCACCAACAACAAGTACATTTCCGGTAGATCCACCATTGGTCCATCAAGTCATACCTGCAACATCTCCATCTGAACTACCAGCACCTGTCATCTCTCCCTCCTTAACACCTTCCAGAAGCTTCAAAGGGAAAAACGGTGGAGAACCTGTTTCTGCGCCTTTGTACAAAACACCGAAGTCTCCACCAAGTTCAGTTCATTCTCCTGCTCAAGCTCCTTCTGAACATAAAGCAAGACCATCACATTATGCTCCTGAGCCACTGATTTCACCTCCTAAATCTCCTTTCAACAAAGAAGATCATTCTCCTGCATCTTCACCTTCTACCGCAGTTTATAAGCATCAGCGTACACGGAACACGATAACCAGGCCAGCTCCTGCATCTTCACCTTCTATCACATATTTTGCTTCTCCTCCCACTTCAAAACACCAAGATCAACCAATTCCTCCCTCATTTCTTCCAACAAGTAGACGGAGACATTATGCTCCACCACCAATGAACACAGGTTCTGCAGATTCTCCATTTACCTTCCCTATTCACTCACCAGTGAGCCAGGTTTCACCTGCTCCTTCTCCATCATTCAAGATTTCCCCTCATTCAACCAAAATTCCATTTCATCCTCCTGACATATCTCCTTCACGGCCTTTTTCGAAGAGCCCTAAGAAGCCAGTATTACCTCGAGTTCAAGCATTGCCACCCCCACCTCCTAATGAAGATTGCATATCATATATTTGCTCGGAGCCTTATACGAATTCTCCACCTGGGGTGCCCTGCATGTGTGTCTGGCCAATGAGAGTTGGCCTTCGCCTCAGTGTTCCTCTGTATACCTTCTTCCCTTTGGTTTCGGAGCTTGCTTCTGAATTAGCCAATGGGGTTTTCATGAAACAAAGTCAAGTTCGAATTATGGGGGCCAATGCAGCAACTGAGCAGCCAGATAAAACTGATGCTCTCATTGATTTTGTACCACTTGGGGAACAATTTGACAACACTACAGCCTTTTTAACTTCTGAGAGGTTTTGGCATAAACAAGTTGTTATAAAAGCTTCTTACTTTGGAGATTATGAAGTGTTATATGTAAGCTATCCAGGTTTACCTCCATCTCCTCCATTACCACCTTCAAGTGTTAACATGATAGATGGTGGTCCGTATTCAAATAATGGCAATAATGGGAGAACAATAAAGCCTCTCGGGGTTGACATACAAAAGAAGCAACATAAAAGTGGACTTAGCAAAAGCATTATAGCTATTATTGCCCTTTCAGCTTTTCTAGCTATTGTTTTATGCTCTGCTGCTGTTTTCGCTTTATTCATGTTCAGAGATCATGTGCCTGAATCTCAACCAACATCAACCCCACGGGGTTTTCCACTATCTCTTGCCAAAGCATCAGGTACTGCTGGGCCATCAGTTGGAGGTGCAGTTACTTCCGCTTCAACATCATTTCGATCTAGTATTGCTGCTTACGCAGGATCTGCTAAGACTTTCAGTATGAATGAAATAGAGAAAGCAACTGATAATTTTCACCCTTCTAGAATACTTGGAGAAGGAGGTTTTGGTCTTGTTTATAGATGTGACCTTGAAGATGGGTCAAAAGTGGCAGTCAAAGTTCTAAAGAGGGAGGATCATCATGGAGATCGTGAATTCTTATCTGAAGTTGAGATGCTTAGCCGCCTTCATCATAGAAATTTGGTAAAATTGATTGGTATATGTACAGAACTCAGCTCCCGCTGTCTGGTTTACGAACTCATTCCAAATGGCAGCGTGGAATCTCATTTACATGGAGTTGACAAGGAAAAAAACCCACTTGATTGGAGTACTCGGATAAAGATAGCACTTGGTGCTGCTCGTGGTCTTGCCTACTTGCATGAAGATTCAAGTCCACATGTCATACATAGGGATTTCAAATCTAGCAATATCTTGCTGGAAAATGATTTTACACCAAAAGTATCTGATTTTGGATTGGCTCGAACGGCAGCAGACGAGGATAACAGGCACATATCTACACGTGTCATGGGAACTTTCGGATATGTGGCTCCCGAGTATGCAATGACCGGGCATCTTCTCGTGAAGAGTGACGTATACAGCTATGGTGTTGTTCTTCTTGAGCTTTTGACAGGAAGAAAACCAGTGGACTTTTCCCAACCACCTGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCCCTTCTAACAAGTAGAGAAGGACTTGAAGCAATAATCGATCCATCTCTAGGAACTAACGTTCCTTTTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCAATGTGTGTACAACCAGAGGTTTCAGATCGTCCTTTCATGGGGGAGGTTGTTCAGGCTTTGAAACTCGTGTGTAATGAATGCGATGAAGCAAAAGAGGCAGGTTCAACAAGTTCTAGCAAAGATGATTTATCTTCTGATTTCAATGCTGCTTCTGAACAGCAATCCAATAATTTCCAAAGCCATTTCTCAGCGGGTAACTATGATTTCGGAGTTGATATCGAAAATGGATTGTCAGCATCAGAGATATTCAGCTCATCAGCAAGATTTGGAAGGCAGGTATCTGGATCATTTAGAAGACATTCATATTCAGGTCCTCTAAGAACAGTAAGAAGCAAGCGGTTATGGCAGATAATTCGAAAGATTTCTGGCGGAAGTGTAAGTGAACATGGGGATATGTTCAAGTAA 4137 0.4346 MGMVLPLILLLVKLCVMQGSEGSVISPSPAFLPAVHHNGEAPGPIHNGQSWRSNASSPFDPHGSVISPSPATLHVDLSPSEAPSLLRSNGSFVQPPVALPPLTLAPTPEKIKGSESSISISPSPSPSTKSLTPPYKAVPAPSTAERNFPPSIQPIPPQRKAPTFSPLISSPIAPALVAMPPEILPKTSPISQPIEHGSLPPKVDKRNESKSHNLEPVSPGPFLQPPVALPPNASAPPPQKIKGIESSISPSPSPNIKSLLPPYKVVPAPSTVERNSPPSMQPIPPQMKAPIVRPPVSTPIAPAPFATPSGNLSITSPISQPIEHGSFPPTNDRRNESKSHNLEPVSPAPVAPPSTDMPKISPLSPSTDNGSFPPNSPSTPTNKGHAPETISPDAAPVFNFPKYSPANQPTEPGSLPPTVHKRNSSNSHTLEPVSQAPVAEPPTSFPKSSPVSQPTHHGNFPPNVHNRTVDKGHSHTPEPVMPPVVASPTTSTFPVDPPLVHQVIPATSPSELPAPVISPSLTPSRSFKGKNGGEPVSAPLYKTPKSPPSSVHSPAQAPSEHKARPSHYAPEPLISPPKSPFNKEDHSPASSPSTAVYKHQRTRNTITRPAPASSPSITYFASPPTSKHQDQPIPPSFLPTSRRRHYAPPPMNTGSADSPFTFPIHSPVSQVSPAPSPSFKISPHSTKIPFHPPDISPSRPFSKSPKKPVLPRVQALPPPPPNEDCISYICSEPYTNSPPGVPCMCVWPMRVGLRLSVPLYTFFPLVSELASELANGVFMKQSQVRIMGANAATEQPDKTDALIDFVPLGEQFDNTTAFLTSERFWHKQVVIKASYFGDYEVLYVSYPGLPPSPPLPPSSVNMIDGGPYSNNGNNGRTIKPLGVDIQKKQHKSGLSKSIIAIIALSAFLAIVLCSAAVFALFMFRDHVPESQPTSTPRGFPLSLAKASGTAGPSVGGAVTSASTSFRSSIAAYAGSAKTFSMNEIEKATDNFHPSRILGEGGFGLVYRCDLEDGSKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICTELSSRCLVYELIPNGSVESHLHGVDKEKNPLDWSTRIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLENDFTPKVSDFGLARTAADEDNRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDFSQPPGQENLVAWARPLLTSREGLEAIIDPSLGTNVPFDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEAKEAGSTSSSKDDLSSDFNAASEQQSNNFQSHFSAGNYDFGVDIENGLSASEIFSSSARFGRQVSGSFRRHSYSGPLRTVRSKRLWQIIRKISGGSVSEHGDMFK 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 403 433 - -
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 513 527 - -
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 654 683 - -
Vifa1g08805 1378 Gene3D Phosphorylase Kinase; domain 1 963 1066 - -
Vifa1g08805 1378 PANTHER OS01G0750732 PROTEIN 717 1291 - -
Vifa1g08805 1378 SUPERFAMILY Protein kinase-like (PK-like) 972 1264 IPR011009 -
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 278 302 - -
Vifa1g08805 1378 Gene3D Transferase(Phosphotransferase) domain 1 1067 1290 - -
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 360 386 - -
Vifa1g08805 1378 FunFam receptor-like serine/threonine-protein kinase ALE2 964 1066 - -
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 47 63 - -
Vifa1g08805 1378 Pfam Protein tyrosine and serine/threonine kinase 994 1264 IPR001245 GO:0004672|GO:0006468
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 110 132 - -
Vifa1g08805 1378 FunFam Receptor-like serine/threonine-protein kinase ALE2 1067 1286 - -
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 584 636 - -
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 184 716 - -
Vifa1g08805 1378 CDD STKc_IRAK 997 1265 - -
Vifa1g08805 1378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1113 1125 IPR008271 GO:0004672|GO:0006468
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 219 237 - -
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 308 326 - -
Vifa1g08805 1378 ProSitePatterns Protein kinases ATP-binding region signature. 997 1019 IPR017441 GO:0005524
Vifa1g08805 1378 ProSiteProfiles Protein kinase domain profile. 991 1267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 36 77 - -
Vifa1g08805 1378 MobiDBLite consensus disorder prediction 97 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08805 Vifa-Chr1 1391023814 1391032855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08805 344 1374 Receptor kinase-like Gene Family AT5G56890 52.986 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa1g08805 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08805 - - psat:127136544 2364.73