Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08804 ATGGGGATGGTTTTGCCTCTGATTCTGTTGCTCGTGAAGCTTTGTGTCATGCAAGGATCTGAAGGGTCTGTTATATCCCCATCTCCAGCATTTCTTCCTGCTGTTCATCATAATGGAGAAGCACCTGGTCCTATCCATAATGGACAGTCATGGCGAAGCAATGCATCAAGCCCTTTTGATCCACATGGGTCTGTCATATCACCATCTCCAGCAACATTACATGTGGATCTTTCGCCTAGTGAAGCACCAAGTCTTTTACGCTCAAATGGGTCTTTTGTACAACCTCCAGTTGCATTACCACCGCTTACATTAGCTCCAACTCCTGAGAAGATTAAAGGAAGCGAATCATCCATATCCATATCACCTAGTCCTAGTCCAAGCACCAAATCGTTAACTCCACCGTATAAGGCTGTTCCAGCACCATCAACTGCTGAAAGGAATTTTCCACCATCCATACAGCCAATTCCACCTCAAAGGAAAGCACCTACTTTTAGTCCTCTTATATCCTCACCAATTGCTCCAGCTCTTGTTGCAATGCCTCCTGAAATTTTGCCTAAAACTTCACCTATCAGTCAACCAATCGAACATGGCAGTTTGCCTCCTAAGGTTGATAAGAGGAATGAAAGTAAGAGTCACAATTTAGAACCAGTTTCACCAGGTCCTTTCTTGCAACCTCCAGTTGCATTACCACCTAATGCATCAGCTCCACCTCCTCAGAAGATTAAAGGAATTGAATCATCCATATCACCTAGTCCTAGTCCAAACATCAAATCGTTGTTGCCGCCATATAAGGTTGTTCCTGCACCATCAACTGTTGAAAGGAATTCGCCACCATCGATGCAACCAATTCCACCTCAAATGAAAGCACCTATTGTCAGGCCTCCTGTATCCACACCAATTGCTCCAGCTCCTTTTGCAACACCTTCTGGAAATTTGTCTATAACTTCACCTATCAGCCAACCAATTGAACACGGAAGTTTTCCTCCTACGAATGATAGGAGGAATGAAAGTAAGAGTCACAACCTAGAGCCGGTTTCACCAGCCCCAGTTGCACCACCTTCTACTGATATGCCCAAAATTTCACCATTAAGCCCTTCAACTGATAATGGAAGTTTTCCTCCTAATTCTCCCAGTACACCTACAAATAAAGGTCACGCTCCAGAAACAATTTCACCAGACGCAGCTCCTGTATTCAATTTTCCGAAATATTCGCCAGCGAATCAACCGACTGAACCTGGAAGTTTGCCTCCAACTGTCCATAAAAGGAACTCCAGCAACAGTCACACATTGGAGCCAGTTTCACAGGCCCCGGTTGCAGAACCCCCTACAAGTTTTCCAAAAAGTTCTCCAGTTAGCCAACCAACTCATCATGGAAATTTTCCACCTAATGTTCATAATAGAACTGTAGATAAGGGACATAGTCATACACCAGAGCCAGTAATGCCACCAGTAGTTGCATCACCAACAACAAGTACATTTCCGGTAGATCCACCATTGGTCCATCAAGTCATACCTGCAACATCTCCATCTGAACTACCAGCACCTGTCATCTCTCCCTCCTTAACACCTTCCAGAAGCTTCAAAGGGAAAAACGGTGGAGAACCTGTTTCTGCGCCTTTGTACAAAACACCGAAGTCTCCACCAAGTTCAGTTCATTCTCCTGCTCAAGCTCCTTCTGAACATAAAGCAAGACCATCACATTATGCTCCTGAGCCACTGATTTCACCTCCTAAATCTCCTTTCAACAAAGAAGATCATTCTCCTGCATCTTCACCTTCTACCGCAGTTTATAAGCATCAGCGTACACGGAACACGATAACCAGGCCAGCTCCTGCATCTTCACCTTCTATCACATATTTTGCTTCTCCTCCCACTTCAAAACACCAAGATCAACCAATTCCTCCCTCATTTCTTCCAACAAGTAGACGGAGACATTATGCTCCACCACCAATGAACACAGATTCTCCATTTACCTTCCCTATTCACTCACCAGTGAGCCAGGTTTCACCTGCTCCTTCTCCATCATTCAAGATTTCCCCTCATTCAACCAAAATTCCATTTCATCCTCCTGACATATCTCCTTCACGGCCTTTTTCGAAGAGCCCTAAGAAGCCAGTATTACCTCGAGTTCAAGCATTGCCACCCCCACCTCCTAATGAAGATTGCATATCATATATTTGCTCGGAGCCTTATACGAATTCTCCACCTGGGGTGCCCTGCATGTGTGTCTGGCCAATGAGAGTTGGCCTTCGCCTCAGTGTTCCTCTGTATACCTTCTTCCCTTTGGTTTCGGAGCTTGCTTCTGAATTAGCCAATGGGGTTTTCATGAAACAAAGTCAAGTTCGAATTATGGGGGCCAATGCAGCAACTGAGCAGCCAGATAAAACTGATGCTCTCATTGATTTTGTACCACTTGGGGAACAATTTGACAACACTACAGCCTTTTTAACTTCTGAGAGGTTTTGGCATAAACAAGTTGTTATAAAAGCTTCTTACTTTGGAGATTATGAAGTGTTATATGTAAGCTATCCAGGTTTACCTCCATCTCCTCCATTACCACCTTCAAGTGTTAACATGATAGATGGTGGTCCGTATTCAAATAATGGCAATAATGGGAGAACAATAAAGCCTCTCGGGGTTGACATACAAAAGAAGCAACATAAAAGTGGACTTAGCAAAAGCATTATAGCTATTATTGCCCTTTCAGCTTTTCTAGCTATTGTTTTATGCTCTGCTGCTGTTTTCGCTTTATTCATGTTCAGAGATCATGTGCCTGAATCTCAACCAACATCAACCCCACGGGGTTTTCCACTATCTCTTGCCAAAGCATCAGGTACTGCTGGGCCATCAGTTGGAGGTGCAGTTACTTCCGCTTCAACATCATTTCGATCTAGTATTGCTGCTTACGCAGGATCTGCTAAGACTTTCAGTATGAATGAAATAGAGAAAGCAACTGATAATTTTCACCCTTCTAGAATACTTGGAGAAGGAGGTTTTGGTCTTGTTTATAGATGTGACCTTGAAGATGGGTCAAAAGTGGCAGTCAAAGTTCTAAAGAGGGAGGATCATCATGGAGATCGTGAATTCTTATCTGAAGTTGAGATGCTTAGCCGCCTTCATCATAGAAATTTGGTAAAATTGATTGGTATATGTACAGAACTCAGCTCCCGCTGTCTGGTTTACGAACTCATTCCAAATGGCAGCGTGGAATCTCATTTACATGGAGTTGACAAGGAAAAAAACCCACTTGATTGGAGTACTCGGATAAAGATAGCACTTGGTGCTGCTCGTGGTCTTGCCTACTTGCATGAAGATTCAAGTCCACATGTCATACATAGGGATTTCAAATCTAGCAATATCTTGCTGGAAAATGATTTTACACCAAAAGTATCTGATTTTGGATTGGCTCGAACGGCAGCAGACGAGGATAACAGGCACATATCTACACGTGTCATGGGAACTTTCGGATATGTGGCTCCCGAGTATGCAATGACCGGGCATCTTCTCGTGAAGAGTGACGTATACAGCTATGGTGTTGTTCTTCTTGAGCTTTTGACAGGAAGAAAACCAGTGGACTTTTCCCAACCACCTGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCCCTTCTAACAAGTAGAGAAGGACTTGAAGCAATAATCGATCCATCTCTAGGAACTAACGTTCCTTTTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCAATGTGTGTACAACCAGAGGTTTCAGATCGTCCTTTCATGGGGGAGGTTGTTCAGGCTTTGAAACTCGTGTGTAATGAATGCGATGAAGCAAAAGAGGCAGGTTCAACAAGTTCTAGCAAAGATGATTTATCTTCTGATTTCAATGCTGCTTCTGAACAGCAATCCAATAATTTCCAAAGCCATTTCTCAGCGGGTAACTATGATTTCGGAGTTGATATCGAAAATGGATTGTCAGCATCAGAGATATTCAGCTCATCAGCAAGATTTGGAAGGCAGGTATCTGGATCATTTAGAAGACATTCATATTCAGGTCCTCTAAGAACAGTAAGAAGCAAGCGGTTATGGCAGATAATTCGAAAGATTTCTGGCGGAAGTGTAAGTGAACATGGGGATATGTTCAAGTAA 4128 0.4344 MGMVLPLILLLVKLCVMQGSEGSVISPSPAFLPAVHHNGEAPGPIHNGQSWRSNASSPFDPHGSVISPSPATLHVDLSPSEAPSLLRSNGSFVQPPVALPPLTLAPTPEKIKGSESSISISPSPSPSTKSLTPPYKAVPAPSTAERNFPPSIQPIPPQRKAPTFSPLISSPIAPALVAMPPEILPKTSPISQPIEHGSLPPKVDKRNESKSHNLEPVSPGPFLQPPVALPPNASAPPPQKIKGIESSISPSPSPNIKSLLPPYKVVPAPSTVERNSPPSMQPIPPQMKAPIVRPPVSTPIAPAPFATPSGNLSITSPISQPIEHGSFPPTNDRRNESKSHNLEPVSPAPVAPPSTDMPKISPLSPSTDNGSFPPNSPSTPTNKGHAPETISPDAAPVFNFPKYSPANQPTEPGSLPPTVHKRNSSNSHTLEPVSQAPVAEPPTSFPKSSPVSQPTHHGNFPPNVHNRTVDKGHSHTPEPVMPPVVASPTTSTFPVDPPLVHQVIPATSPSELPAPVISPSLTPSRSFKGKNGGEPVSAPLYKTPKSPPSSVHSPAQAPSEHKARPSHYAPEPLISPPKSPFNKEDHSPASSPSTAVYKHQRTRNTITRPAPASSPSITYFASPPTSKHQDQPIPPSFLPTSRRRHYAPPPMNTDSPFTFPIHSPVSQVSPAPSPSFKISPHSTKIPFHPPDISPSRPFSKSPKKPVLPRVQALPPPPPNEDCISYICSEPYTNSPPGVPCMCVWPMRVGLRLSVPLYTFFPLVSELASELANGVFMKQSQVRIMGANAATEQPDKTDALIDFVPLGEQFDNTTAFLTSERFWHKQVVIKASYFGDYEVLYVSYPGLPPSPPLPPSSVNMIDGGPYSNNGNNGRTIKPLGVDIQKKQHKSGLSKSIIAIIALSAFLAIVLCSAAVFALFMFRDHVPESQPTSTPRGFPLSLAKASGTAGPSVGGAVTSASTSFRSSIAAYAGSAKTFSMNEIEKATDNFHPSRILGEGGFGLVYRCDLEDGSKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICTELSSRCLVYELIPNGSVESHLHGVDKEKNPLDWSTRIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLENDFTPKVSDFGLARTAADEDNRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDFSQPPGQENLVAWARPLLTSREGLEAIIDPSLGTNVPFDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEAKEAGSTSSSKDDLSSDFNAASEQQSNNFQSHFSAGNYDFGVDIENGLSASEIFSSSARFGRQVSGSFRRHSYSGPLRTVRSKRLWQIIRKISGGSVSEHGDMFK 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08804 1375 Pfam Protein tyrosine and serine/threonine kinase 991 1261 IPR001245 GO:0004672|GO:0006468
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 403 433 - -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 513 527 - -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 184 658 - -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 278 302 - -
Vifa1g08804 1375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1110 1122 IPR008271 GO:0004672|GO:0006468
Vifa1g08804 1375 CDD STKc_IRAK 994 1262 - -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 360 386 - -
Vifa1g08804 1375 ProSitePatterns Protein kinases ATP-binding region signature. 994 1016 IPR017441 GO:0005524
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 47 63 - -
Vifa1g08804 1375 SUPERFAMILY Protein kinase-like (PK-like) 969 1261 IPR011009 -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 110 132 - -
Vifa1g08804 1375 Gene3D Transferase(Phosphotransferase) domain 1 1064 1287 - -
Vifa1g08804 1375 PANTHER OS01G0750732 PROTEIN 714 1288 - -
Vifa1g08804 1375 ProSiteProfiles Protein kinase domain profile. 988 1264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 687 713 - -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 584 636 - -
Vifa1g08804 1375 FunFam receptor-like serine/threonine-protein kinase ALE2 961 1063 - -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 219 237 - -
Vifa1g08804 1375 FunFam Receptor-like serine/threonine-protein kinase ALE2 1064 1283 - -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 308 326 - -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 36 77 - -
Vifa1g08804 1375 MobiDBLite consensus disorder prediction 97 166 - -
Vifa1g08804 1375 Gene3D Phosphorylase Kinase; domain 1 960 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08804 Vifa-Chr1 1391023814 1391032855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08804 344 1371 Receptor kinase-like Gene Family AT5G56890 53.220 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa1g08804 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08804 - - psat:127136544 2353.94