Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08796 ATGTGCTCTGCCACTGCTACAACACCCTTGTTTTCCACGGATCACCACCTTCCCAAATCCTTCACCCGCCTCTGCAAACCCTTCCATTCTAGGGTTCCCACTTCCTTAACCTTCCATTCCACACCACCCACCTTCGTTGTCAGAGCTACCGTTCTGAAGTGGCGATGTCCAAAGCAAACTCTACCACCCAACAGCGATACCGGTTTTGGAAAAAAGGCCCTGTATCTAGAATCTATCGGTATCGACCCTTTCTCTCTTATTGAAAATCATCCGATGTTGATCACTGCCTCACTCAACGATATCAAATCCACTGTGGAATACATTACCACAATGGATTTCTCTGCAATTGAGTTTAGGCGAATGGTTGGCATGTGCCCTGCGATCCTGACCACGAAAGTCTCAGACCTGATACCTGTCTTCACGTTCCTTCACCGCGAAGTTCGTGTAAGTGGCTCAAATATCAAGCATGTAATAAATCGCCGTCCTCGGTTAATCATCTGCAACGTTGATAAACAACTCCGTCCAACCATGTACTTCCTCCAAAGCATCGGAATAGAAGAGGTATACAAGCACACCGACTTGCTATCATGTAGTGTCGAAGATAAGTTCATGCCCCGAATCGAATACTTTGAGAACATCGGATTCTCACGCAGCGACGTAACTTCAATGTTCCGAAGATTTCCTCAACTGTTTTGTTATAGTATTAAGAATAATTACGAGCCGAAATACAATTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGGTAAAAGAATTTCCACAATATTTCTCATTTAGCTTAGAGAATAGGATTAAGCCTAGACATAAAAGGTGTGTAGAAATGGGTGTGTGTTTTCCTCTTCCTTTGTTGTTAAAGACTAGTGAAGTGACATTTCAGAATAGATTAGAAGCATTTGTAAGTTCTTCAACACCATTGAAAACTTCTCCTTTGTGGCGTGCTGGTCGTGATATTGGTCAAGTATAG 987 0.4316 MCSATATTPLFSTDHHLPKSFTRLCKPFHSRVPTSLTFHSTPPTFVVRATVLKWRCPKQTLPPNSDTGFGKKALYLESIGIDPFSLIENHPMLITASLNDIKSTVEYITTMDFSAIEFRRMVGMCPAILTTKVSDLIPVFTFLHREVRVSGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGIEEVYKHTDLLSCSVEDKFMPRIEYFENIGFSRSDVTSMFRRFPQLFCYSIKNNYEPKYNYFVVEMGRDLKEVKEFPQYFSFSLENRIKPRHKRCVEMGVCFPLPLLLKTSEVTFQNRLEAFVSSSTPLKTSPLWRAGRDIGQV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08796 328 Pfam mTERF 154 300 IPR003690 GO:0003690|GO:0006355
Vifa1g08796 328 Pfam mTERF 70 150 IPR003690 GO:0003690|GO:0006355
Vifa1g08796 328 SMART mt_12 221 253 IPR003690 GO:0003690|GO:0006355
Vifa1g08796 328 SMART mt_12 155 186 IPR003690 GO:0003690|GO:0006355
Vifa1g08796 328 SMART mt_12 187 216 IPR003690 GO:0003690|GO:0006355
Vifa1g08796 328 SMART mt_12 84 114 IPR003690 GO:0003690|GO:0006355
Vifa1g08796 328 SMART mt_12 254 285 IPR003690 GO:0003690|GO:0006355
Vifa1g08796 328 SMART mt_12 119 150 IPR003690 GO:0003690|GO:0006355
Vifa1g08796 328 PANTHER CGI-12 PROTEIN-RELATED 85 302 IPR003690 GO:0003690|GO:0006355
Vifa1g08796 328 FunFam Transcription termination factor MTEF1, chloroplastic 143 307 - -
Vifa1g08796 328 Gene3D Transcription termination factor 3, mitochondrial 57 308 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g08796 mTERF 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08796 K15032 - gmx:100794678 533.102