Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08794 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAGACTCAAGTTAAGAGAGGACCTTGGAGCCCTGCTGAAGATCTTAAACTTATTGCTTTTGTTCAGAAATTTGGTCATGAAAATTGGAGATCTCTCCCTAAACAAGCAGGTCTTCAAAGATGTGGAAAAAGTTGTCGTTTAAGATGGATCAATTATCTTAGACCTGATTTAAAGAGAGGCAATTTTACAGTAGATGAAGAGGAAACTATAATAAAGTTACATAAAGCTATGGGAAACAAGTGGTCAAAGATAGCATCATATCTGCCTGGTAGAACTGATAACGAGATCAAGAATGTGTGGAACACACACTTAAAGAAAAAACTTGTCATCAAAAGTTCAGATTCAACAAGTGGAGATGAATCTAAATTAGAGTCATCAATAACCTCACCCTCTTCATCCGAATCAATTTTATCAAACGAGGCACCAATAAGAGAGTCGGAAAAACAAGTTTCCAACAAACATGTTATCGTCAATGGCGATCCAAAAGGGTCATCAAATTCATTGTCATATTCAATCGAGTCTAACAAAATCTTGAACTCGAGCGAAATTGTTGACAACAAAATAGAACAACATTTGAGTTCTCTAGAGTCTTATGACATTGACAAAATATTAGAAGATGTGGAAAATCTAAACAATTTGATTGAAATACCATGGGAATCAGATTATGATCTTTGGAATTTTATTGACAATATTGGTTCTTATGATCAATCAAATGTTGGTGAAGAGAGTGTTATTCAAGATGTTGTTGAGAATGAATTTGGAGAAGTAGGTGAAATAAAGGAGTCAAAGAACAAGGAAGAGGTTCTACCAAAGAATTATGAAGTTGACCCTCATGATGCATTTGATTTCAATGATATTATAATGTCTGATTCTGAATTAGATTTTGGTAGTATTCAATTGTGGTCCTCTTTTTCTGAAAATAATAGTCCTAAAGTTTAA 969 0.3406 MGKGRAPCCDKTQVKRGPWSPAEDLKLIAFVQKFGHENWRSLPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTVDEEETIIKLHKAMGNKWSKIASYLPGRTDNEIKNVWNTHLKKKLVIKSSDSTSGDESKLESSITSPSSSESILSNEAPIRESEKQVSNKHVIVNGDPKGSSNSLSYSIESNKILNSSEIVDNKIEQHLSSLESYDIDKILEDVENLNNLIEIPWESDYDLWNFIDNIGSYDQSNVGEESVIQDVVENEFGEVGEIKESKNKEEVLPKNYEVDPHDAFDFNDIIMSDSELDFGSIQLWSSFSENNSPKV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08794 322 Gene3D - 16 68 - -
Vifa1g08794 322 SMART sant 68 116 IPR001005 -
Vifa1g08794 322 SMART sant 15 65 IPR001005 -
Vifa1g08794 322 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vifa1g08794 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 218 - -
Vifa1g08794 322 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vifa1g08794 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vifa1g08794 322 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vifa1g08794 322 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vifa1g08794 322 CDD SANT 71 114 IPR001005 -
Vifa1g08794 322 MobiDBLite consensus disorder prediction 124 155 - -
Vifa1g08794 322 CDD SANT 18 63 IPR001005 -
Vifa1g08794 322 MobiDBLite consensus disorder prediction 124 177 - -
Vifa1g08794 322 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vifa1g08794 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vifa1g08794 322 FunFam Transcription factor RAX3 9 69 - -
Vifa1g08794 322 Gene3D - 70 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08794 Vifa-Chr1 1389230433 1389233001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08794 1 253 MYB Transcription Factor Family AT1G79180 48.966 1.79e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g08794 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08794 K09422 - gmx:100101836 373.629