Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08779 ATGGAAGGTGTATTTTCCCTTCCTGTAGCCGTCAGAACTGAAGTTATCCATTCTTTGATGCAGTCTCTTGGAGGATGTTCATACATTTGTCTTTGGACATATGATACCATATCACCAAATCGTTTGTCCTTCTTGGATGGTATCTATAATGTGATAAGCAACCACCAACCAAGTTCTTCTTTGGGAAGCATCGCACAACGGCTTTTCAATCAGTATACCATTTTATCATTTGATATCAATGATGACCGGATTCCTGGACTAGCTTTTAGGAATCAACGTCCTTATCTAGAGCTGCAGCAGCTGGAGCTTCTGACACTGTCATCGACAGAAATACAAACACAATTTTACAAGGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAACTGATATTCAAACGGCACTTAGGAATTTATTTCCTCAAGATTTTTCAAGACAGATGCAACAAATTGATCAGAATAATAATAATAATAATCCACCTTCATCATCTTCATCTTCAATGAGATCACTATCAACAGCTGGTAGTCCTGAATACTCATCTCTCATGTTCAACAAAAATCCACCTGGAACTTCTCCATCATCACATCACTTTCCTGATCATATCCTTGGAGGAGTAAACATTCCTCCAATGAGACCTGTTTCAAACACACTACCCTTTCAACTTCAACAACAACCTCAAATCACACCAACACAATTGTTCCCTATTGATCAACAGAATGATGCAATAATGAGAGCAATCCAAAATGTTCTATCTACACCCCCTTCTCAGCAAAGTTACACAGCACATCCAGAAGCTAGTGCATTTGGAAGAAGCTTGAATTTGATGAGACTAAGAGAACGAAATCAAGCCATGCGTCCTTCTAGTAACCAACTTCATCATATGATATCGGAACGACGAAGGCGCGAGAAGCTTAATGATAATTTCCAAGCACTTCGAGCGCTACTTCCTCAAGGAACTAAGAAAGACAAAGCATCCATACTGATAACAGCCAAGGAGACAGTAAGGTCATTGATGGAAGAAATAGAAAAACTAAGCAAAAGAAACCAACAGTTGTTGATGTCACAAAAGTCGGCTGCTTCGAATAAAGAAACTATGAAATTCTCGTCAAATGAAAGAATTAACGTGCGAGTTTCGCATGTACCAGAATCAAGTTCATCACACGATGAACCAATGCTAGTGGAGTTACAAGTGAATGTGATAGGACAAATTTCTCAAGTCGATATGTTGATTCGATTATTAGAATTCTTAAATCAAGTTAATCATGTCAATTTGATTTCAATGGATGCAACAAATACAAACACTTCACAAGAGGATAATTATCTTCATCAAATAACATTCAGACTAAGGATTACTCAGGTGAGTGAATGGGACGAAGAGGCTTTCCAAGAAGCAGTGAGAAGAGTAGTTGCTGACTTGATACAGTACCAAGTGGACCATAATATATGA 1491 0.383 MEGVFSLPVAVRTEVIHSLMQSLGGCSYICLWTYDTISPNRLSFLDGIYNVISNHQPSSSLGSIAQRLFNQYTILSFDINDDRIPGLAFRNQRPYLELQQLELLTLSSTEIQTQFYKEARIKTAVFMGCNKGEIELGFLNMSQTDIQTALRNLFPQDFSRQMQQIDQNNNNNNPPSSSSSSMRSLSTAGSPEYSSLMFNKNPPGTSPSSHHFPDHILGGVNIPPMRPVSNTLPFQLQQQPQITPTQLFPIDQQNDAIMRAIQNVLSTPPSQQSYTAHPEASAFGRSLNLMRLRERNQAMRPSSNQLHHMISERRRREKLNDNFQALRALLPQGTKKDKASILITAKETVRSLMEEIEKLSKRNQQLLMSQKSAASNKETMKFSSNERINVRVSHVPESSSSHDEPMLVELQVNVIGQISQVDMLIRLLEFLNQVNHVNLISMDATNTNTSQEDNYLHQITFRLRITQVSEWDEEAFQEAVRRVVADLIQYQVDHNI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08779 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 370 IPR036638 GO:0046983
Vifa1g08779 496 Coils Coil 342 369 - -
Vifa1g08779 496 CDD bHLH_AtbHLH_like 308 360 IPR045239 -
Vifa1g08779 496 MobiDBLite consensus disorder prediction 165 208 - -
Vifa1g08779 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Vifa1g08779 496 Pfam Helix-loop-helix DNA-binding domain 307 352 IPR011598 GO:0046983
Vifa1g08779 496 Gene3D - 301 378 IPR036638 GO:0046983
Vifa1g08779 496 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 486 IPR044658 -
Vifa1g08779 496 MobiDBLite consensus disorder prediction 165 222 - -
Vifa1g08779 496 SMART finulus 309 358 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08779 Vifa-Chr1 1385923381 1385926109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08779 12 487 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 37.944 5.95e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g08779 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08779 - - gmx:100807098 521.546