Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08772 ATGGTGAAGCTTTTCTGGGTTAGCATTGTAATAGCACTTGTTTTCATCAAATTGGTTGATGCATATCACATCAATGAAACTGAACTCTCTATCTTAGAAGCTCATGAAGGTTATTCTTTTTCTTCCAACCTTGTGAATCAGCCTCGCATGGTGGGAATCACCTTTATTCAATCTGCTGCTGCTAAAGGAGCTGTCTGCTTGGATGGAACATTTCCTGCTTATCATTTCGACCGCGGATACGGATCGGGAGCAAACAGCTGGATTGTTAACTTAGAGGGAGGTGCGTGGTGTAATAACGTTAGAACATGCGTTTATCGCAAGACTACACGGCGTGGATCATCAAATTTCATGGAGAAGGCGATACCTTTTACGGGAATAATGAGCAATAATCCTCGAGAGAATCCAGATTTCTTTAACTGGAATAGAGTGAAAATTCGTTACTGTGATGGTGCTTCTTTTACCGGTGATAGTGAAAATAGGGTAATTCCTGGCAATCTGATACTCAACATGCTTCTCCATCACCTCTCACCTAATAGTTTTCACATGGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTGAATGTACTTCTGAATAATGGGGTTGATACAGAATTGGCCCTTCAAACTACTGAAGAAGAAACCAATCTATACCCTATTCACATGGCTGCACGCCTCGGACTATGCAACATTCTTCAATGTTTGATTAATGGTAACTGTAACTTGGACTCGCAAACAAAACTTGGTGACACGGCGTTGATGGTTTGCACAAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCGTTTGGTCATTGCGCAACTTCAACAGCAACTTCTATTCATTGGACTAAAGAATATCAGAAAGCAGGTTTGGATATAATTAGAGCCAGAAAGGTTGTTAAGTCTAGCAATGCGTCTAGATTTTCATCTTTGTTATTCGTCACTCACGCGAATGACATAGAGGCTTTGAAAAAAGTCGTTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGAGTGGATTTTCAGCTGTCATGATATCTGCTTCAGAGGGTAGCGTGGAGGCATTCAAGTTGCTTCTTCACGCTGGAGCTGATGTAACCAATCTTAAAAACAAAGATGGTTTAACAGCTCTAGATATCATAGATTTGAAACAAAATGGTGAAGATGGTCATAAGGTGATGTTTGAATATGCACTTAAAAAGGGATGTTTGAATATTAGTACTTTAGCCGAAGCGAATACTCTTCACCGTGCAGCTTGTTATGGAGATATAAACATGGTTGAAAAACTACTAAAGGAAGGGAATTACGATGTGAATGGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCCAGAGAAAGTAATGGAGAAATGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAGAATGAAAGACATGAAACAGCACTTTTACTTGCAAGAGAAAAAAATTTGAAAGGAAATGATGCAGAGAATGTGATCATGGATGAGTTAGCTAGAAGAGTAGTATTGTGCGGTGCGCGTGTGAAGAAACATACAAAATGTGGTAAAGGACTTTCATGA 1632 0.3903 MVKLFWVSIVIALVFIKLVDAYHINETELSILEAHEGYSFSSNLVNQPRMVGITFIQSAAAKGAVCLDGTFPAYHFDRGYGSGANSWIVNLEGGAWCNNVRTCVYRKTTRRGSSNFMEKAIPFTGIMSNNPRENPDFFNWNRVKIRYCDGASFTGDSENRVIPGNLILNMLLHHLSPNSFHMGRTLLHHTIICNNERALNVLLNNGVDTELALQTTEEETNLYPIHMAARLGLCNILQCLINGNCNLDSQTKLGDTALMVCTRYKHEKCLRVLVSSGADLGIVNSFGHCATSTATSIHWTKEYQKAGLDIIRARKVVKSSNASRFSSLLFVTHANDIEALKKVVENRNINLDEQNESGFSAVMISASEGSVEAFKLLLHAGADVTNLKNKDGLTALDIIDLKQNGEDGHKVMFEYALKKGCLNISTLAEANTLHRAACYGDINMVEKLLKEGNYDVNGFDENGYTPLMLAARESNGEMCGLLISHGAKCDIKNERHETALLLAREKNLKGNDAENVIMDELARRVVLCGARVKKHTKCGKGLS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08772 543 Gene3D - 303 407 IPR036770 -
Vifa1g08772 543 SMART ANK_2a 220 249 IPR002110 GO:0005515
Vifa1g08772 543 SMART ANK_2a 462 491 IPR002110 GO:0005515
Vifa1g08772 543 SMART ANK_2a 428 458 IPR002110 GO:0005515
Vifa1g08772 543 SMART ANK_2a 253 282 IPR002110 GO:0005515
Vifa1g08772 543 SMART ANK_2a 357 386 IPR002110 GO:0005515
Vifa1g08772 543 SMART ANK_2a 182 211 IPR002110 GO:0005515
Vifa1g08772 543 Pfam Ankyrin repeat 358 389 IPR002110 GO:0005515
Vifa1g08772 543 Gene3D - 408 511 IPR036770 -
Vifa1g08772 543 ProSiteProfiles Ankyrin repeat profile. 357 389 IPR002110 GO:0005515
Vifa1g08772 543 ProSiteProfiles Ankyrin repeat profile. 462 494 IPR002110 GO:0005515
Vifa1g08772 543 Pfam Ankyrin repeats (3 copies) 193 282 IPR002110 GO:0005515
Vifa1g08772 543 Pfam Ankyrin repeats (3 copies) 412 493 IPR002110 GO:0005515
Vifa1g08772 543 ProSiteProfiles Ankyrin repeat region circular profile. 357 384 - -
Vifa1g08772 543 PANTHER ANKYRIN REPEAT-CONTAINING 157 536 - -
Vifa1g08772 543 ProSiteProfiles Ankyrin repeat profile. 253 285 IPR002110 GO:0005515
Vifa1g08772 543 SUPERFAMILY Ankyrin repeat 182 506 IPR036770 -
Vifa1g08772 543 Coils Coil 337 357 - -
Vifa1g08772 543 ProSiteProfiles Ankyrin repeat region circular profile. 462 494 - -
Vifa1g08772 543 Pfam Pectinacetylesterase 47 159 IPR004963 GO:0016787
Vifa1g08772 543 Gene3D - 167 302 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08772 Vifa-Chr1 1384405162 1384407272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08772 1 160 Carbohydrate Esterase AT3G05910 60.366 3.45e-61 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08772 - - mtr:11444172 589.341