Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08770 ATGAATAAGTCATCTAGAGCTATTACAAGTTTTTGGCTTATGATGAGTTTCTTCATTTTGAGCGAGGCTGAACCTATGAAAACCCAACTTAGTCCAGATTTTTACAGGACAACATGCCCCGATCTTTGGACAATAGTTAGGCGAGAGGTTTTGAACGCGATGGAAGATGAGATTCGAATGGCTGCTTCGTTGCTTCGCCTTCATTTTCATGATTGCTTTGTAAATGGTTGTGATGGTTCAATTCTACTAGATGGAGACGAAGAAAGTGAGAAATTTGCTACTCCTAACAAGAATTCTGCTAGAGGATTTGAAGTCATAGATAGAATCAAAAGCTCACTAGAGAGTTCATGTAGTGGTGTTGTGTCTTGTGCTGATATATTAGCCATAGTTGCAAGAGATTCTGTTTTCCTAAGTGGTGGTCCTTTTTGGTACGTTCAACTAGGACGTAGAGATGGATTGGTCTCGAACAAGACTCTAGCCAATCTCGCAATTCCTTCTCCATTTGATACACTAGATAATATTACTTCCAAGTTTGATAACGTCGGTCTCAATCTCAAAGACGTTGTTACTTTATCAGGGGCTCACACTATCGGACGAGCAAGGTGCACATTTTTCAGCAACAGATTATTCAATTTCTCGGGGACAGAAGAACCAGACAATACATTAGAATCTGAAATGCTTTTTGACTTGCAAAATTTGTGTCTGCAAGATGAAGACGGGAACGCGACTACGGTTCTAGATTCGAACTCATTTGATCAATTTGATAGCAATTATTTCAAGAATTTACTAAATGGAAAGGGTCTCCTAAGCTCTGATCAGATTCTGTTTTCAAGTGATGAAGAGGTTACTTCAACCACAAAACAATTGGTCCAATTTTATAGTGAGAATGAAAGAGAGTTTTTTATGGAATTTGCTTATGCTATGATTAAGATGGGGAATATTAGTCCACTTATTGGTTCTGAGGGAGAGATTAGGAATGATTGCAGAGTGATTAATTCTTGA 1002 0.3832 MNKSSRAITSFWLMMSFFILSEAEPMKTQLSPDFYRTTCPDLWTIVRREVLNAMEDEIRMAASLLRLHFHDCFVNGCDGSILLDGDEESEKFATPNKNSARGFEVIDRIKSSLESSCSGVVSCADILAIVARDSVFLSGGPFWYVQLGRRDGLVSNKTLANLAIPSPFDTLDNITSKFDNVGLNLKDVVTLSGAHTIGRARCTFFSNRLFNFSGTEEPDNTLESEMLFDLQNLCLQDEDGNATTVLDSNSFDQFDSNYFKNLLNGKGLLSSDQILFSSDEEVTSTTKQLVQFYSENEREFFMEFAYAMIKMGNISPLIGSEGEIRNDCRVINS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08770 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vifa1g08770 333 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 CDD secretory_peroxidase 29 331 IPR033905 GO:0004601|GO:0042744
Vifa1g08770 333 Gene3D - 34 332 - -
Vifa1g08770 333 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 Pfam Peroxidase 46 294 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 FunFam Peroxidase 165 311 - -
Vifa1g08770 333 FunFam Peroxidase 33 203 - -
Vifa1g08770 333 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Vifa1g08770 333 ProSiteProfiles Plant heme peroxidase family profile. 29 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 PANTHER PEROXIDASE 72-RELATED 27 330 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g08770 333 Gene3D Peroxidase, domain 2 165 311 - -
Vifa1g08770 333 SUPERFAMILY Heme-dependent peroxidases 29 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08770 Vifa-Chr1 1384137188 1384138556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08770 1 332 Peroxidase AT5G19890 58.133 5.99e-135 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08770 K00430 - gmx:100817622 439.884