Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08762 ATGGCAGGAGTTGCACCAGAGGGTTCTCAGTTTGATGCTAAACAATTTGATACCAAAATGAATGAGTTACTCACCACCGAAGGACAGGACTTCTACACCTTTTATGAGGAGGTTTTTGAAAGTTTTGATTTAATGGGCTTGCAAGAGAACCTTCTCAGAGGCATTTACGCATATGGTTTTGAGAAGCCATCAGCTATTCAGCAACGTGGAATAGTTCCATTTTGCAAGGGACTTGATGTTATACAACAAGCTCAGTCTGGAACAGGGAAGACTGCAACTTTCTGCTCTGGGATTCTGCAGCAACTTGACTACAGTGTAACAGAATGCCAGGCCTTGGTCTTGGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGAGATTATCTAGGTGTGAAGGTACATGCTTGTGTGGGAGGGACCAGCGTTCGTGAAGACCAACGTATTCTGTCAAGTGGTGTTCATGTTGTTGTTGGTACCCCTGGCCGTGTATTTGACATGCTGCGCAGACAGTCACTTAGGCCAGATTACATCAAAATGTTTGTATTAGATGAGGCTGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGATCTACGATATATTCCAGCTGTTGCCATCTAAGATTCAAGTGGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCGCTCGAGATCACAAGAAAGTTTATGAACAAACCTGTGAGGATTCTTGTGAAGCGAGATGAGCTCACCTTGGAGGGTATTAAGCAATTTTATGTCAATGTTGATAAAGAGGAATGGAAGCTGGACACACTTTGTGATCTTTATGAGACATTGGCAATCACTCAGAGTGTCATCTTTGTGAACACCAGACGGAAAGTGGATTGGCTAACTGACAAGATGCGTAGCCGTGACCACACAGTTTCAGCAACACATGGAGACATGGACCAGAATACTAGGGACATTATCATGCGGGAATTCCGTTCGGGATCTTCCCGTGTTTTAATAACTACTGATCTTCTGGCCCGTGGTATTGATGTGCAGCAAGTGTCTTTAGTTATAAATTATGATCTCCCAACACAACCTGAAAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTGGTAGGAAGGGTGTTGCCATTAACTTTGTGACGAAGGATGATGAAAGAATGCTGGGTGACATCCAGAAGTTCTACAATGTGCTGATTGAAGAGCTTCCTTCCAATGTTGCTGAACTTCTGTGA 1242 0.4404 MAGVAPEGSQFDAKQFDTKMNELLTTEGQDFYTFYEEVFESFDLMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSVTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLGDIQKFYNVLIEELPSNVAELL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08762 413 Gene3D - 249 413 IPR027417 -
Vifa1g08762 413 SMART ultradead3 59 256 IPR014001 -
Vifa1g08762 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Vifa1g08762 413 PANTHER RNA HELICASE 29 397 - -
Vifa1g08762 413 CDD DEADc_EIF4A 45 242 - -
Vifa1g08762 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Vifa1g08762 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 392 IPR027417 -
Vifa1g08762 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Vifa1g08762 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Vifa1g08762 413 Gene3D - 31 248 IPR027417 -
Vifa1g08762 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Vifa1g08762 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Vifa1g08762 413 CDD SF2_C_DEAD 253 383 - -
Vifa1g08762 413 SMART helicmild6 293 374 IPR001650 -
Vifa1g08762 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Vifa1g08762 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08762 Vifa-Chr1 1383869472 1383871843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08762 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 88.647 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08762 K03257 - gmx:100788218 793.497