Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08760 ATGGGATTTCTTACCACACACTACAACAACTATAATAATTCTTATCCTTCTCAAACTCTTCAAACTATTGACAACTCCGAAACCATCACTTTCCAATATCATGAACAACAACAACTATTTGAACTGTCTCAACAAAACTATGACTTTTCTTCTTCTTTTCTAGATGAAATCTTATTTTTTCCGAGTCCTTATTTTTACTCTAACGAGAATTATCCTTGTGAAGATCAACTAATCATTGACTCAACTTTTTCTTGTGATCAAAATGATGGTTTTGTTTCAATGAATGACATTTTCCCTAACGATGAAAATTTCAACAACTACGTTCTTCCATGTCCAAAACGACAAAAAATAGGTTATGAAGAAGCAAACCAACAAGAGCTTTTGAACTCATGCAATTATTTTGTGGATGAGTTTATAGCGAACCCTTTTACTACTTCCTTTGAAGCGGAAGCGTTTTCGGGTTCGAATATGGTTGATGTTAATGTGCAATGTGAGAAGAAGGTTAGTGAAAGGAGTATCTCGACCCAGAGTATTGCGGCGAGAGAAAGAAGAAGGAAGATAACTGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCTAAGATGAACACTGCTGAGATGCTTAATGCTGCTTCTAATTATGTTACGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACTTTCAGCAAGGAAGAAAAGGAACCTCCTCCTCCAAGTGAAGAACTACACAAACTAGTTGTTTCTCCTTTTGTTCAAGAGAAGTTGTATTCAGAAGAAAAGTGCTTTATTTCAAAAGAGATTGTCACCACATTGAGCAACAATGTTGATGTTAGGTCAAAACCTTCAATCCTTCAAGGTCTTAAACAACTTGTTGGAGCAGAGATTAATCATGAGAATGAGGAGAAACCAAAACAAGAATAA 936 0.3611 MGFLTTHYNNYNNSYPSQTLQTIDNSETITFQYHEQQQLFELSQQNYDFSSSFLDEILFFPSPYFYSNENYPCEDQLIIDSTFSCDQNDGFVSMNDIFPNDENFNNYVLPCPKRQKIGYEEANQQELLNSCNYFVDEFIANPFTTSFEAEAFSGSNMVDVNVQCEKKVSERSISTQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAASNYVTFLQAQVGMLQLMETFSKEEKEPPPPSEELHKLVVSPFVQEKLYSEEKCFISKEIVTTLSNNVDVRSKPSILQGLKQLVGAEINHENEEKPKQE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08760 311 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 68 271 IPR045843 GO:0003700|GO:0006355
Vifa1g08760 311 SMART finulus 177 226 IPR011598 GO:0046983
Vifa1g08760 311 Gene3D - 169 239 IPR036638 GO:0046983
Vifa1g08760 311 Pfam Helix-loop-helix DNA-binding domain 177 221 IPR011598 GO:0046983
Vifa1g08760 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 232 IPR036638 GO:0046983
Vifa1g08760 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08760 Vifa-Chr1 1383735141 1383736270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08760 71 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 35.573 2.12e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g08760 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08760 - - psat:127131095 504.597