Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08750 ATGGAACGTCGCGTTGGAAATAAGTATCGTCTTGTTCGTAAGATCGGTAGTGGCTCATTTGGGGAGATCTATTTAGGTACTAATATTCAAACTAATGAAGATGTTGGAGTTAAACTTGAAAATGTCAGAACGAAGAATCCTCAGTTGCTGTATGAGTCCAAGTTGTACAGAATACTACAAGGAGAGCCTGGGATTCCAAATATTAAATGGTTTGGAGTGGATGGAGATTACAATGTTCTAGTAATGGATCTGCTTGGACCTAGTCTCGAAGAGATGTTTAACTTCTGTAATAGAAAGCTCTCGCTAAAGACAGTTCTCATGCTTGCTGAGCAAATGATCAAGCGTGTTGAGTTTGTTCATTCTAAATCGTTTCTCCATCGGGATATCAAACCAGATAATTTCCTCATGGGCTTGGGAAAACGGGAAAACCAGGTTTACTGTATTGATTTTGGTTTAGCAAAGAAATATAGAGATAGTACAACCCATCGACATATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACCCACCTTGGCATTGAGCAAAGTCGAAGAGATGATTTAGAGTCTATTGGTTATGTCTTGATGTACTTCCTGAGAGGAAGTCTCCCATGGCAAGGACTTCAAGCAAGAACCAAGAGAGAAAAGTACGAGAAAATCAGTGAAAAGAAGGTTTCTACTTCGATTGAGGCCTTGTGTCAAGGTTATCCGACAGAATTTGCGTCATACTTCCATTATTGTCGGTCATTAAGGTTTGATGACAGACCAGATTATGCTTACCTCAAAAGAATATTCCGTGACCTGTTTATCCGCGAAGGATTCCAGTCTGATTACGTCTTTGATTGGACTATCTTGAAATATCAGCAATCACAGCTAATCACTCCTCCAGCACGCGGTATTGGGCCCGGTGCCGGAACTAGTTCAGGAATGCCTCTTGCTATGACTAGTGCTAACCGACACACTGGAAGGGAAGATGGGCGTCCTCCTGGTTTGGTTTCAGGAGACTCTTCAAGACGACGAATGTCGGGGCCCATTTTAAATTCTGTAAATATGTCAAAGCAGAAAAATCCAACCCCTAGTGACGCTGCTGTTAGTAAGGAGGTTATGTTATCAAATTCCAATGTCTTGGGCGAATCAAGCGGGTCATCAAGGCGAGTTGCTGATAGTAGTAGCCGCAATCCATTTGGTGGCGCTGATTCGGATCTTCGTGCTCGTGCTACCGAAGCTATCCGTGGAAAAGCACACATAAGTTCAAGTGGACAAAGAGGTTCGCACGTTGGATCGTCAGATCCAAATAGAGTAGCAACATCTTCTAATAACGGTTCTCATGCCAAGAATTATGAAACCGCAGTCAAGGGAATGGAGGGTTTGAAATTAAAAAATGTCGATTCCCATTAA 1422 0.4212 MERRVGNKYRLVRKIGSGSFGEIYLGTNIQTNEDVGVKLENVRTKNPQLLYESKLYRILQGEPGIPNIKWFGVDGDYNVLVMDLLGPSLEEMFNFCNRKLSLKTVLMLAEQMIKRVEFVHSKSFLHRDIKPDNFLMGLGKRENQVYCIDFGLAKKYRDSTTHRHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLQARTKREKYEKISEKKVSTSIEALCQGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQSDYVFDWTILKYQQSQLITPPARGIGPGAGTSSGMPLAMTSANRHTGREDGRPPGLVSGDSSRRRMSGPILNSVNMSKQKNPTPSDAAVSKEVMLSNSNVLGESSGSSRRVADSSSRNPFGGADSDLRARATEAIRGKAHISSSGQRGSHVGSSDPNRVATSSNNGSHAKNYETAVKGMEGLKLKNVDSH 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08750 473 MobiDBLite consensus disorder prediction 348 404 - -
Vifa1g08750 473 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08750 473 CDD STKc_CK1_delta_epsilon 8 282 - -
Vifa1g08750 473 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08750 473 MobiDBLite consensus disorder prediction 304 473 - -
Vifa1g08750 473 PANTHER CASEIN KINASE-RELATED 7 381 - -
Vifa1g08750 473 MobiDBLite consensus disorder prediction 425 454 - -
Vifa1g08750 473 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Vifa1g08750 473 FunFam Putative Casein kinase I 1 85 - -
Vifa1g08750 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa1g08750 473 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vifa1g08750 473 FunFam Casein kinase I 1 304 - -
Vifa1g08750 473 Pfam Protein kinase domain 9 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08750 Vifa-Chr1 1383175324 1383181702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08750 9 217 EF-hand Containing Proteins AT2G17290 28.634 5.17e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa1g08750 Pkinase 3.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08750 K02218 - gmx:100785851 739.954