Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08738 ATGGAGAATCACATAAATGGAGGAGAAGAGGAACAAGAACAACAACGGGAGGTGGGTGTCATTGCTGGTGGTGAAGAGGATGAGGCTGTTTCCACCATGACTATGGAAAGGGTTGCTGCTGCTAAGAAATTCATTGAGAATCATTATAGGTCTCAGATGAAACACATCCAAGAACGCAAGGAAAGGCGATCGGAGCTGCAAAAGGAGTTAGAATCGTCTCGTGTTCCAGAAGAGGAACAGATCAATTTACTGAAGGATTTAGAGAGCAAGGAGACGGAGTATATGCGGTTGAAAAGACATAAAATATGTGTTGATGATTTTGATCTTTTAACCATTATTGGCAGGGGAGCCTTTGGCGAGGTAAGACTCTGTCGCGAGAAGAAATCGGGTATTATATATGCGATGAAAAAGTTGAAAAAGTCTGAAATGCTCAGCAGGGGACAGGTTGAGCATGTTAGAGCTGAAAGGAATGTACTAGCAGAAGTTGTCAATGACTTCATTGTGAAACTTTATTACTCATTCCAAGATCCCGAATTCTTATATCTTATAATGGAATATTTACCTGGTGGCGATATAATGACTTTGTTGATGAGGGAAGAAACTTTGACAGAAAGTGTGGCTCGATTTTACATCGCGCAAACCGTTTTGGCCATAGAGTCTATTCATAAACACAACTACATTCATCGGGATATAAAACCTGACAACCTTCTGTTAGACAAATATGGTCACATGAAACTGTCGGATTTCGGTCTTTGCAAACCACTTGACTGCTCAAATCTATCATCTATAAATGAAAATGAAATATTTGATGATGATGATAACTTGAATGATACAATGGACGTTGATGGAAGTTGCCCAAGTAACAGAAATGGTAGGCGTTGGAAAAGTCCGCTCGAGCAACTTCAACATTGGCAAATGAATAGGAGGAAGTTGGCGTTTTCAACTGTTGGAACTCCCGACTATATTGCTCCGGAAGTGTTATTGAAAAAGGGTTATGGTGTAGAGTGCGACTGGTGGTCTCTTGGGGCTATTATGTATGAGATGCTCGTCGGTTATCCTCCATTTTACTCTGATGATCCTGTAACAACATGCAGAAAGATTGTGCACTGGAAAAATCACTTAAAATTTCCGGACGAGGCAAGACTGACCCCTGAAGCAAAAGATCTGATATGCAGGTTGCTTTGTGGTGTTCCGCATAGGCTTGGTACCAGAGGAGCAACTGAAATTAAAGCTCATCCTTGGTTCAGAGATATCTTATGGAACAGGCTCTATGGAACCGAGGCAGCATTTAAACCGCGAGTCATTGGGGAGCTTGACACTCAGAATTTTATGAAATTCGATGAGGTTGAACCACCAAAGCCAGGTCGAGCAGGATCCGGACCCATCAGAAAGACGCTCTTAACTACTCAAGATCTCAGTTTCGTTGGCTATACATATAAGAATTTTGCCGCTGTCAAGGGGAAGCGTCATTCTAATGAAAAGGGAAACCTGTCACCGCGGTCATCAATCGACTCTACTCACAGTGATTCTGCCGTAAACTATTCCACCTGA 1551 0.4217 MENHINGGEEEQEQQREVGVIAGGEEDEAVSTMTMERVAAAKKFIENHYRSQMKHIQERKERRSELQKELESSRVPEEEQINLLKDLESKETEYMRLKRHKICVDDFDLLTIIGRGAFGEVRLCREKKSGIIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVVNDFIVKLYYSFQDPEFLYLIMEYLPGGDIMTLLMREETLTESVARFYIAQTVLAIESIHKHNYIHRDIKPDNLLLDKYGHMKLSDFGLCKPLDCSNLSSINENEIFDDDDNLNDTMDVDGSCPSNRNGRRWKSPLEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEARLTPEAKDLICRLLCGVPHRLGTRGATEIKAHPWFRDILWNRLYGTEAAFKPRVIGELDTQNFMKFDEVEPPKPGRAGSGPIRKTLLTTQDLSFVGYTYKNFAAVKGKRHSNEKGNLSPRSSIDSTHSDSAVNYST 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08738 516 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Vifa1g08738 516 MobiDBLite consensus disorder prediction 496 516 - -
Vifa1g08738 516 Pfam Protein kinase domain 307 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08738 516 Pfam Protein kinase domain 109 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08738 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Vifa1g08738 516 SUPERFAMILY Protein kinase-like (PK-like) 89 455 IPR011009 -
Vifa1g08738 516 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa1g08738 516 FunFam Non-specific serine/threonine protein kinase 314 433 - -
Vifa1g08738 516 CDD MobB_NDR_LATS-like 41 102 - -
Vifa1g08738 516 FunFam Non-specific serine/threonine protein kinase 68 190 - -
Vifa1g08738 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 469 - -
Vifa1g08738 516 CDD STKc_NDR_like 105 480 - -
Vifa1g08738 516 Gene3D Phosphorylase Kinase; domain 1 66 190 - -
Vifa1g08738 516 Gene3D Phosphorylase Kinase; domain 1 434 444 - -
Vifa1g08738 516 Gene3D Transferase(Phosphotransferase) domain 1 191 258 - -
Vifa1g08738 516 FunFam Non-specific serine/threonine protein kinase 191 258 - -
Vifa1g08738 516 ProSiteProfiles Protein kinase domain profile. 107 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08738 516 SMART serkin_6 107 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08738 516 SMART pkinase_C_6 416 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa1g08738 516 MobiDBLite consensus disorder prediction 488 516 - -
Vifa1g08738 516 Gene3D Transferase(Phosphotransferase) domain 1 314 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08738 Vifa-Chr1 1380286625 1380289608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08738 26 499 AGC Kinase Gene Family AT2G19400 75.523 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vifa1g08738 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08738 K08790 - gmx:100811359 847.425