Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08733 ATGGAATTTGAAGACCATGAAGAACAAGAAGAAGAGTTATGTATGGGTTCAGCGAGTTATGACTCGTTACCTAACTCGTCACGAGTTAAGATGCCAGGTGGCACTGAAGCTATTATGGTTACTCATCCATTGAGAAACATCATCAACAACAACGCAAGGTATAGAGAGTGTTTAAAGAATCATGCTGTCGGAATAGGTGGCCATGCTTTAGATGGTTGCGGCGAGTTTATGCCGGCGGGGAATGAAGGAAGTTTGGAGTCACTAAAATGCGCTGCGTGTAACTGCCACCGTAATTTCCACCGCAAAGAGTCGTCGACTGACTTCCCCGGCGGAGATCCTTTTCTGTTGACGCATCACCACCACCATGCGCCGCCTCAGCCGCAGTTTGCGGCTTATTATCGAACTCCGGCTGGGTACTTGCATGTTTCCGGACAACAGAGGCCGGGGACGCTTGCTCTACCGTCGACCTCCGGTGGTGGAGGAGGGACGCAGAGCACGAGGGAAGATCAAGATGAAGATATTTCAAATCCGAGTGGCGGAGGTTCGAGTAAGAAGCGCCACCGAACCAAGTTTACACCGGAACAGAAGGATAAGATGTTGGAGTTAGCTGAGAAATTGGGGTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAATTCTGCAATGAAAGTGGTGTTAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTCGGTAAGAAGCCCTAG 744 0.4839 MEFEDHEEQEEELCMGSASYDSLPNSSRVKMPGGTEAIMVTHPLRNIINNNARYRECLKNHAVGIGGHALDGCGEFMPAGNEGSLESLKCAACNCHRNFHRKESSTDFPGGDPFLLTHHHHHAPPQPQFAAYYRTPAGYLHVSGQQRPGTLALPSTSGGGGGTQSTREDQDEDISNPSGGGSSKKRHRTKFTPEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08733 247 MobiDBLite consensus disorder prediction 101 122 - -
Vifa1g08733 247 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Vifa1g08733 247 FunFam Zinc-finger homeodomain protein 2 171 245 - -
Vifa1g08733 247 Gene3D - 169 245 - -
Vifa1g08733 247 SUPERFAMILY Homeodomain-like 171 245 IPR009057 -
Vifa1g08733 247 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Vifa1g08733 247 MobiDBLite consensus disorder prediction 143 195 - -
Vifa1g08733 247 MobiDBLite consensus disorder prediction 148 165 - -
Vifa1g08733 247 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 243 - -
Vifa1g08733 247 NCBIfam homeobox domain, ZF-HD class 184 240 IPR006455 -
Vifa1g08733 247 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08733 Vifa-Chr1 1379591301 1379592134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08733 53 243 ZF-HD Transcription Factor Family AT4G24660 53.927 2.81e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa1g08733 ZF-HD_dimer 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08733 - - gmx:100808910 316.235