Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08728 ATGGAGGAAATAACTTCGACGGTTGCAGTGCCATTTCCACTTGGGAATTTAATACAAAACGAGTCAGCAGTGACAACTCAAATGGAAATATCTAGTTTAAAGCTTATGGCAAATACAGCAACTGTATTAGTATTTAATCCTGCTTCCGTCGAGGATTGTCAATCGTTTTCTGTTGGAAGTGAAGACGACGTCGACATGTATATTAGTCCACAACAAAACCAAATATCAGTGTCTTTGGAAGTTAAGGAGAATCAAGTTGGAGGTGAAGTTGTCTCTGAAATGGTTCATGAAAGTGACAGTAACGGAAGATATGAAGATGAATTCAAAATACATAAGGATTTTCAGTGTATACATAATCCATCTTTTCAGTCTGCAATTTTGAGGACTAACTCTTCTGAAATGAACACACCGAATACCATCATGGTTAATGATTATATCAACGATAAGTCTAGTTTGAATGAGTCGATGAAGAATGTGGCTTCTGTTGTGACGAACCACGAGAGTGAAGGTGGAAGTAAATCAGATGGTCCTAATTCAAAGCCAATTGTTGTGGTTCATAAGACGCTAGAGAAGCAAACAATCACAACAAGCTGTGATAATGGTTTGGAATTGAGTGAAACTCCTCTCTATGGTTTCTCATCTGTTATTGGAATGAGACAAGAGATGGAAGATGCTATTGTTATTAAGCCTCAACTTTTTCAAGTACCTTCTATGATGCTCATGGAGGACCAAGTGAATGAAAACACAAAACGCTCACTGGCACACCTTTTTGGCGTCTATGACGGACATGGAGGAAGTCAGGTTGCCAATTACTGTCAGAAACATCTTCATTCAGTTTTGGTTGAGGAGATAGAAGCTGCAGAATCCAGTTTATCCGAAAACAATGAAAAAGACAATTGGCAGGACCGATGGAAGAAAGTACTCACCAATTGTTTTCAAAAAGTAGATGATAAGATTGTAGGAATTGATGAAGCTAATCGTGAAAGGAGCAGTAATGATGGATCTGAGTCAAGTACCGAAGAAACTCTTGCTCCTGAGACTGTTGGATCCACTGCACTGGTTGCAATTTTGACTAAAACACACATAATAGTTGCAAATTGTGGCGATTCACGAGCGGCCTTGTGTCGAGGAAAAGAAGCACTGCCATTGTCTACCGACCATAAACCAAATAGAGAGGGTGAGTGGGAAAGGATAGAAGCTGCCGGAGGAAAGATCATACAATGGAATGGATACCGAGTTCTCGGTGTTTTGGCAGTATCAAGATCAATAGGTGATAAATACTTGAAACCATGGATAATTCCAGATCCAGAAGTCACAATCGCCCTCCGAGAGAAAAACGACGAATGTCTTATTCTAGCAAGTGATGGTTTATGGGACGTCATGACAAATGAAGAAGCGTGCGAGATTGCTCGGAAGCGAATCCTTATTTGGCATAAGAAGAACGGAACCAATGCGTCAACCGTACAAAGCGACGGAGTTAACCCTGCAGCTCAGTATGCTGCAGAGTATCTATCAAAACTTGCTCTTCAAAGAGGAAGCAAAGATAACATCTCAGTTATTGTTATAGACTTGAAAGCTCAAAGACAGATCAAGATAAAAGCATAA 1605 0.4006 MEEITSTVAVPFPLGNLIQNESAVTTQMEISSLKLMANTATVLVFNPASVEDCQSFSVGSEDDVDMYISPQQNQISVSLEVKENQVGGEVVSEMVHESDSNGRYEDEFKIHKDFQCIHNPSFQSAILRTNSSEMNTPNTIMVNDYINDKSSLNESMKNVASVVTNHESEGGSKSDGPNSKPIVVVHKTLEKQTITTSCDNGLELSETPLYGFSSVIGMRQEMEDAIVIKPQLFQVPSMMLMEDQVNENTKRSLAHLFGVYDGHGGSQVANYCQKHLHSVLVEEIEAAESSLSENNEKDNWQDRWKKVLTNCFQKVDDKIVGIDEANRERSSNDGSESSTEETLAPETVGSTALVAILTKTHIIVANCGDSRAALCRGKEALPLSTDHKPNREGEWERIEAAGGKIIQWNGYRVLGVLAVSRSIGDKYLKPWIIPDPEVTIALREKNDECLILASDGLWDVMTNEEACEIARKRILIWHKKNGTNASTVQSDGVNPAAQYAAEYLSKLALQRGSKDNISVIVIDLKAQRQIKIKA 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08728 534 FunFam Protein phosphatase 2C 51 203 532 - -
Vifa1g08728 534 ProSiteProfiles PPM-type phosphatase domain profile. 209 524 IPR001932 -
Vifa1g08728 534 PANTHER PROTEIN PHOSPHATASE 166 524 IPR015655 GO:0004722|GO:0006470
Vifa1g08728 534 SUPERFAMILY PP2C-like 208 525 IPR036457 -
Vifa1g08728 534 Pfam Protein phosphatase 2C 211 517 IPR001932 -
Vifa1g08728 534 ProSitePatterns PPM-type phosphatase domain signature. 256 264 IPR000222 GO:0043169
Vifa1g08728 534 Gene3D - 198 534 IPR036457 -
Vifa1g08728 534 SMART PP2C_4 199 522 IPR001932 -
Vifa1g08728 534 MobiDBLite consensus disorder prediction 323 346 - -
Vifa1g08728 534 CDD PP2Cc 210 524 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08728 Vifa-Chr1 1378214577 1378216688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08728 188 533 PP2C-type Phosphatase Gene Family AT4G26080 56.091 8.37e-134 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08728 K14497 - gmx:100812974 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00306 4 70971221 70977243 Vifa1g08728 1 1378214577 1378216688 PCT