Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08727 ATGAAGAAAGGATGTTTAGATCCAAATCTCAAACTCACTGTTCCAGCATCTAATCAAGCTTCTTTTGCAAAATTCTTGACTCAAAGTGGCACTTTTAAAGATGGAAACTTACTTGTTAATAAGGATGGAGTTAGAATTGTCTCTCAGAGTGAAGTTGAAACTCAACCACCAATAAAGCCAATAGACAATCAGATAAGTTTGGCAGAGATTGATACAATCAAAGTGATTGGAAAGGGAAATGGAGGGATAGTTCAATTGGTTCAACACAAATGGACTAATCAGTTTTTTGCATTAAAGCAAATTCAAATGAATCTTGAGGATTCTACTTGCCGGCAAATAGCACAAGAGCTAAAGATCAATCAATCAGCACAATGTCCTTATGTTGTTGTTTGCTACCAATCGATCTACGATAATGGCACCATATCAATCATCTTAGAGTACATGGATGGGGGCTCCTTAGAGGATCTATCGAACAAAGTTATAACGATTCCAGAACCGTTTCTCGCCGCCATTTGTAAGCAGGTGCTAAAGGGTTTGAATTATCTTCACCAAGAGAAACACATTATTCATAGGGACTTGAAACCTTCTAATATACTTATAAATCATAGAGGCGAGGTAAAGATTACTGATTTCGGTGTCAGTATAATCATGGAAACTACATCTGGTCAAGCAAATACTTTCATCGGTACATACAACTATATGTCTCCAGAAAGAATCGATGGAACCCAACAAGGTTACAATTACAAAAGTGATATATGGAGCTTGGGATTGATGTTGCTTAAGTGTGCAACTGGGAGATTTCCATATACGCCACCAGATAATAGTGATGGATGGGAAAGTTTGTTTCAGCTTATCGAAGCCATTGTTGAAAATCCTTCACCTAGTGCTCCGTCTGACGAATGTTCACCCGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGCAACAGGCCATCGGCTCGAAACCTATTGAGACATCCTTTCGTGAACATGTACGATGACTTAGACGTGGATCTTTCCGACTATTTCTCCAATGTAGGTTCTACACTTGCAACGATATAA 1071 0.3828 MKKGCLDPNLKLTVPASNQASFAKFLTQSGTFKDGNLLVNKDGVRIVSQSEVETQPPIKPIDNQISLAEIDTIKVIGKGNGGIVQLVQHKWTNQFFALKQIQMNLEDSTCRQIAQELKINQSAQCPYVVVCYQSIYDNGTISIILEYMDGGSLEDLSNKVITIPEPFLAAICKQVLKGLNYLHQEKHIIHRDLKPSNILINHRGEVKITDFGVSIIMETTSGQANTFIGTYNYMSPERIDGTQQGYNYKSDIWSLGLMLLKCATGRFPYTPPDNSDGWESLFQLIEAIVENPSPSAPSDECSPEFCSFISACLQKNPSNRPSARNLLRHPFVNMYDDLDVDLSDYFSNVGSTLATI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08727 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vifa1g08727 356 CDD PKc_MAPKK_plant_like 68 336 - -
Vifa1g08727 356 Gene3D Transferase(Phosphotransferase) domain 1 150 353 - -
Vifa1g08727 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08727 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08727 356 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
Vifa1g08727 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 14 336 - -
Vifa1g08727 356 SUPERFAMILY Protein kinase-like (PK-like) 55 339 IPR011009 -
Vifa1g08727 356 FunFam Mitogen-activated protein kinase kinase 6 151 351 - -
Vifa1g08727 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vifa1g08727 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08727 356 Gene3D Phosphorylase Kinase; domain 1 44 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08727 Vifa-Chr1 1378211530 1378214030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08727 27 353 MAP Kinase Kinase Gene Family AT4G26070 65.749 3.80e-163 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vifa1g08727 Pkinase 3.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08727 K20603 - gmx:100789734 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08727 1 1378211530 1378214030 Vifa1g08727 1 1378211530 1378214030 ECH
Vifa4g04351 4 1376094933 1376098451 Vifa1g08727 1 1378211530 1378214030 PCT