Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08720 ATGGCTGAAAGCTTTGACAGTGCTACATCTAATCTTCTATGTTCTGAAAACAATAGAACATGCTTTGATGAGGATGTGGAATGCATTGGTGTTGTTGATGGTTCTGGAATCTCAACTTCATGGGACCACATGATGAACCTTAACTTGGACAACGTTGGATCGGATTCGTTTGTGTGTTTTGTTGCACAGAGTGAGGAAATTGTGAGGGTTATGGTTGACAAAGAGATTGAGCATTTGCCTAGAGAGGATTATTTGATGAGATTGCGTAGTGGTGACTTGGATTTGAGTGTTAGAAGAGAGGCTCTTGATTGGATTTGGAAGGCTCATGCTTATTATGGATTTGGACCCCTGAGTCTTTGCTTATCGGTGAACTACTTGGATCGGTTCTTATCGGCTTATCAATTACCGAGAGGTGTGAGTTGGACTGTGCAATTGTTAGCTGTGGCTTGCTTTTCACTTGCGGCTAAAATGGAAGAAGTTAAAGTGCCGCATTGCATAGATTTACAGGTCGGTGAACCGAGATTCGTGTTCCAAGCGAAAACAATTCAAAGAATGGAACTAATGATACTAAGCACATTAGGATGGAAAATGCATGCTTTAACTCCTTGTTCCTTCATAGACTACTTCATATCTAAGATCAGCTGCGAGGAGAATCATCCTGAAAAGTCGTCGATTACAAGATCAGTGCAACTCATCCTTAACATAATCAAGGGTATTGATTTCTTGGAATTCAGGCCTTCTGAAATTGCCGCAGGGGTAGCAATTTCTGTTTTAAAGGAACTGTCGGGCCAAGAAGTCGATAAGGCCATAGCCTATTTCTTCATCGTAGATAAGGAGAGGGTTCTAAAGTGTGTTGAATTGATAAAAGATCTATCCTTGATCAAGGTTGGTGCATCTAAGTATACACCATTAGTGCCTCAAAGTCCTATAGGGGTGCTTGATGGAGGGTGCATGAGTTATAAGAGTGATGAGTTAACAAATGGGTCATATCAAAATTCTTTACATAATAGTCTAAATACTAAAAGGAGAAAATTTGATGGACCTTCCAATGGATGA 1056 0.4034 MAESFDSATSNLLCSENNRTCFDEDVECIGVVDGSGISTSWDHMMNLNLDNVGSDSFVCFVAQSEEIVRVMVDKEIEHLPREDYLMRLRSGDLDLSVRREALDWIWKAHAYYGFGPLSLCLSVNYLDRFLSAYQLPRGVSWTVQLLAVACFSLAAKMEEVKVPHCIDLQVGEPRFVFQAKTIQRMELMILSTLGWKMHALTPCSFIDYFISKISCEENHPEKSSITRSVQLILNIIKGIDFLEFRPSEIAAGVAISVLKELSGQEVDKAIAYFFIVDKERVLKCVELIKDLSLIKVGASKYTPLVPQSPIGVLDGGCMSYKSDELTNGSYQNSLHNSLNTKRRKFDGPSNG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08720 351 CDD CYCLIN_AtCycD-like_rpt1 97 195 - -
Vifa1g08720 351 SMART cyclin_7 103 191 IPR013763 -
Vifa1g08720 351 PANTHER CYCLINS 60 295 IPR039361 -
Vifa1g08720 351 FunFam D2/4-type cyclin 81 195 - -
Vifa1g08720 351 Gene3D - 71 287 - -
Vifa1g08720 351 Gene3D - 81 198 - -
Vifa1g08720 351 SUPERFAMILY Cyclin-like 56 198 IPR036915 -
Vifa1g08720 351 CDD CYCLIN_AtCycD-like_rpt2 201 288 - -
Vifa1g08720 351 Pfam Cyclin, N-terminal domain 66 197 IPR006671 -
Vifa1g08720 351 FunFam D6-type cyclin 196 286 - -
Vifa1g08720 351 Pfam Cyclin, C-terminal domain 201 298 IPR004367 -
Vifa1g08720 351 SMART Cyclin_C_2 200 310 IPR004367 -
Vifa1g08720 351 ProSitePatterns Cyclins signature. 98 129 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08720 Vifa-Chr1 1376931658 1376933601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08720 62 269 Core Cell Cycle Gene Families AT5G65420 58.852 4.33e-87 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08720 K18810 - gmx:100794010 479.559