Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08718 ATGGAAGGTGCTGCTGGTCCTCAGTACAACCCTCGCACCGTCGAAGCTGTTTTCCGGGATTACAAAGGCCGGAGAGCTGGTTTGATCAAAGCTCTCACCGCTGATGTTGAGGAATTTTACCAGCAGTGCGATCCTGAAAAGGAGAATCTTTGTCTGTACGCATATCCTGGTGGATCATGGGAAGTTACTTTACCGGCTGAAGAAGTTCCTCCTGAACTTCCAGAGCCTGCATTGGGCATCAATTTTGCTAGGGATGGAATGCATGAAAAGGACTGGCTATCTTTGGTTGCTGTTCACAGCGATGCTTGGCTACTCTCCGTGTCTTTCTACTTTGCTGCAAGATTCGGTTTTGGTAGATCTGAGAGGAAACGCCTTTTCACTCTTATTAACGATCTTCCGACAATATTTGAGGCTGTGACTGGATCTGCAAGGAAACAGGAAACGGAAAAGCCATCCGTCTCGAGCCACAACAACTCAAAGTCTGGTTCAAAAGTGCGTGGATCTGAACCGGAAAACCAAGAAGAAGAAGAAGAAGAAGAGGAAGATGAAGAAGAGGATGACGAGGTATTGGATGAAGAAGATGAGGAGCAAGGGGAGTGTGCTGCTTGTGGCGAGAGCTATGTATCTGCATCCGAGGAGTTCTGGATTTGCTGCGACGTGTGCGAGAAGTGGTACCATGGAAAGTGTGTGAAGATCACGCCTGCCCGAGCCGAGCACATCAAGCACTACAAGTGTCCTGCATGCAACAACAAGAGAGCCCGTCCTTGA 768 0.487 MEGAAGPQYNPRTVEAVFRDYKGRRAGLIKALTADVEEFYQQCDPEKENLCLYAYPGGSWEVTLPAEEVPPELPEPALGINFARDGMHEKDWLSLVAVHSDAWLLSVSFYFAARFGFGRSERKRLFTLINDLPTIFEAVTGSARKQETEKPSVSSHNNSKSGSKVRGSEPENQEEEEEEEEDEEEDDEVLDEEDEEQGECAACGESYVSASEEFWICCDVCEKWYHGKCVKITPARAEHIKHYKCPACNNKRARP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08718 255 PANTHER CPG BINDING PROTEIN 10 254 IPR045104 GO:0006355|GO:0042393
Vifa1g08718 255 MobiDBLite consensus disorder prediction 142 195 - -
Vifa1g08718 255 SMART PHD_3 199 249 IPR001965 -
Vifa1g08718 255 CDD PHD_AL_plant 200 251 IPR044104 -
Vifa1g08718 255 Coils Coil 172 195 - -
Vifa1g08718 255 MobiDBLite consensus disorder prediction 172 195 - -
Vifa1g08718 255 ProSitePatterns Zinc finger PHD-type signature. 200 248 IPR019786 -
Vifa1g08718 255 MobiDBLite consensus disorder prediction 145 166 - -
Vifa1g08718 255 Pfam PHD-finger 200 250 IPR019787 -
Vifa1g08718 255 ProSiteProfiles Zinc finger PHD-type profile. 197 251 IPR019787 -
Vifa1g08718 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 254 IPR013083 -
Vifa1g08718 255 FunFam PHD finger alfin-like protein 192 250 - -
Vifa1g08718 255 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
Vifa1g08718 255 Pfam Alfin 13 140 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08718 Vifa-Chr1 1376486363 1376488950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08718 1 254 Alfin-like Transcription Factor Family AT3G42790 66.535 1.64e-107 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vifa1g08718 Alfin 9.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08718 K26274 - csin:114296613 365.925