Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08717 ATGAAGCCTTTTCTGTTTTTGAATCCTCCTGATACCGAGTTCTCCTCACAAGTTGATACTAATCACTCAATGGCTCATGCTGCTTATCCTTACGTCGATCCAATTTTTGCTGGTCCATTAGTTGCTTATGCCCCGCAGGCTACTAACCAACCCCAAATGTTACCTCAGATGATGGGATTAGCATCCAATCGAGTTGCGTTACCACCTGATCTTGCACAAGAGGGCCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGACGACAGTCACGAGCAAAGCTTGAGGCTCAGAACAAACTCATCAAAAGTCGTAAACCATATCTTCATGAATCTCGGCACAAGCATGCTTTGAAAAGGGTTAGAGGTTCCGGTGGGCGATTTCTCAGCACCAAACAGCTTTCACAGTCTGGCAAAGAATTTGTCTCTGGTTCAAATTCTGGCGCTGGCTCTATCCACAAATATCAAAAGGAAGATCACACAGAGATGGGAAGTCATCATTCCTCAAAAACTGGAAATAACGAATCTTCCATCACAACCTGTTCCGACCGCACATGTTTTTCCGGTAACCATTTCAATTTTAGGCAACCGGAGCACATGTTTCTCGGGAATTCTCCAAACATGGGTGGAGGAGCACCACAATGCAGTGGAGGACTCACGTTTGGGGGAACAAAACAACGTGCTTCGGTTCGATGA 702 0.4501 MKPFLFLNPPDTEFSSQVDTNHSMAHAAYPYVDPIFAGPLVAYAPQATNQPQMLPQMMGLASNRVALPPDLAQEGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHKHALKRVRGSGGRFLSTKQLSQSGKEFVSGSNSGAGSIHKYQKEDHTEMGSHHSSKTGNNESSITTCSDRTCFSGNHFNFRQPEHMFLGNSPNMGGGAPQCSGGLTFGGTKQRASVR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08717 233 PRINTS CCAAT-binding transcription factor subunit B signature 107 130 IPR001289 GO:0003700|GO:0006355
Vifa1g08717 233 PRINTS CCAAT-binding transcription factor subunit B signature 76 98 IPR001289 GO:0003700|GO:0006355
Vifa1g08717 233 SMART cbf3 72 133 IPR001289 GO:0003700|GO:0006355
Vifa1g08717 233 MobiDBLite consensus disorder prediction 134 180 - -
Vifa1g08717 233 MobiDBLite consensus disorder prediction 134 154 - -
Vifa1g08717 233 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 186 IPR001289 GO:0003700|GO:0006355
Vifa1g08717 233 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 76 130 IPR001289 GO:0003700|GO:0006355
Vifa1g08717 233 ProSitePatterns NF-YA/HAP2 subunit signature. 78 98 IPR018362 GO:0003677|GO:0016602
Vifa1g08717 233 Gene3D - 73 135 - -
Vifa1g08717 233 ProSiteProfiles NF-YA/HAP2 family profile. 73 133 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08717 Vifa-Chr1 1376196147 1376197286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08717 44 145 CCAAT-HAP2 Transcription Factor Family AT1G54160 65.385 3.50e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vifa1g08717 CBFB_NFYA 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08717 K08064 - gmx:100793856 334.724