Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08716 ATGAAGCCTTTTCTGTTTTTGAATCCTCCTGATACCGAGTTCTCCTCACAAGTTGATACTAATCACTCAATGGCTCATGCTGCTTATCCTTACGTCGATCCAATTTTTGCTGGTCCATTAGTTGCTTATGCCCCGCAGGCTACTATGATGGGATTAGCATCCAATCGAGTTGCGTTACCACCTGATCTTGCACAAGAGGGCCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGACGACAGTCACGAGCAAAGCTTGAGGCTCAGAACAAACTCATCAAAAGTCGTAAACCATATCTTCATGAATCTCGGCACAAGCATGCTTTGAAAAGGGTTAGAGGTTCCGGTGGGCGATTTCTCAGCACCAAACAGCTTTCACAGTCTGGCAAAGAATTTGTCTCTGGTTCAAATTCTGGCGCTGGCTCTATCCACAAATATCAAAAGGAAGATCACACAGAGATGGGAAGTCATCATTCCTCAAAAACTGGAAATAACGAATCTTCCATCACAACCTGTTCCGACCGCACATGTTTTTCCGGTAACCATTTCAATTTTAGGCAACCGGAGCACATGTTTCTCGGGAATTCTCCAAACATGGGTGGAGGAGCACCACAATGCAGTGGAGGACTCACGTTTGGGGGAACAAAACAACGTGCTTCGGTTCGATGA 678 0.4499 MKPFLFLNPPDTEFSSQVDTNHSMAHAAYPYVDPIFAGPLVAYAPQATMMGLASNRVALPPDLAQEGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHKHALKRVRGSGGRFLSTKQLSQSGKEFVSGSNSGAGSIHKYQKEDHTEMGSHHSSKTGNNESSITTCSDRTCFSGNHFNFRQPEHMFLGNSPNMGGGAPQCSGGLTFGGTKQRASVR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08716 225 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 178 IPR001289 GO:0003700|GO:0006355
Vifa1g08716 225 ProSitePatterns NF-YA/HAP2 subunit signature. 70 90 IPR018362 GO:0003677|GO:0016602
Vifa1g08716 225 MobiDBLite consensus disorder prediction 126 172 - -
Vifa1g08716 225 MobiDBLite consensus disorder prediction 126 146 - -
Vifa1g08716 225 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 68 122 IPR001289 GO:0003700|GO:0006355
Vifa1g08716 225 Gene3D - 65 127 - -
Vifa1g08716 225 ProSiteProfiles NF-YA/HAP2 family profile. 65 125 IPR001289 GO:0003700|GO:0006355
Vifa1g08716 225 PRINTS CCAAT-binding transcription factor subunit B signature 99 122 IPR001289 GO:0003700|GO:0006355
Vifa1g08716 225 PRINTS CCAAT-binding transcription factor subunit B signature 68 90 IPR001289 GO:0003700|GO:0006355
Vifa1g08716 225 SMART cbf3 64 125 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08716 Vifa-Chr1 1376196147 1376197286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08716 23 131 CCAAT-HAP2 Transcription Factor Family AT1G17590 63.636 1.11e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vifa1g08716 CBFB_NFYA 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08716 K08064 - gmx:100793856 318.931