Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08714 ATGCTTACATGCATAGCACGTCCGAAGAAACTCGGCGAAGACTCAGTGAGTCACGGCGACGATTCAATTTCAGAATCAAACAACAATGCAAAGAACGTAAAATCGCTGACGTGTCAGATAAAAGACATGGCGTTAAAAGCTTCCGGTGTATACAAACACTGTAATCCCTGCGCACCGGCGAGTCGGTTGAGAACCGGTAATTCGGAGTCGGAAACTGACTCGGAGAAGTTTCGGAGGACGAGGACGTGGGGGAAGGAGATGGAAGCGAGGTTGAAAGGGATCTCGAGTGGAGAAGGAACGCCGAGTTCGTCTTCGTCGTCGTTCGGCGGTGGAAGTGGACGGAGAGTGGTGGTTTTGGAGGAGGAGGAAGGGAAGGAGTGGGTGGCGCAAGTGGAGCCTGGCGTTTTGATTACTTTTGTGTCGCTTACGCGTGGCGGGAATGATCTGAAACGGATACGGTTCAGTCGCGATACATTTAACAAATGGCAAGCACAAAGATGGTGGGCAGAGAACTATGACAAAGTCATGGAGCTTTACAATGTTCAAAGGCTTAACCGCCTAGCCTTCCCGTTACCAACACCAGCAAGATCTGAAGACGAGAGTTCAAAGCGTGAATCAATAGCAGACAGCCCAGTGACACCTCCACTAACCAAGGAACAACTATCACGCAATTTATACCGACCAACAGGAACGGGAATGGGATACTCATCCTCAGATTCCTTCGATCAACACTCAATGCAGTCCAAACATTATCAGTATGACTTAAGTGGCATGAACTCAACTCCAAAGGTTTCAACCATTAGTGCTGCAAAGACAGATATATCATCAATGGCTGCTTCTATAAGAAGTAGCTCTTCCAGAGAAGCTGATCGCTCTGGCGATTTATCGATGAGCAATGCTAGTGAACCGGATAGTGAATGGGTTGAGGAGGATGAACCTGGTGTTTACATTACTATCAGGTCTCTGCCAGGAGGTAAAAGGGAGATCAGAAGAGTCAGGTTCAGTCGTGAAAAATTTGGGGAGGTGCATGCTAGACTATGGTGGGAAGAGAACCGCGCCAGAGTACATGAACAATACTTGTGA 1083 0.4801 MLTCIARPKKLGEDSVSHGDDSISESNNNAKNVKSLTCQIKDMALKASGVYKHCNPCAPASRLRTGNSESETDSEKFRRTRTWGKEMEARLKGISSGEGTPSSSSSSFGGGSGRRVVVLEEEEGKEWVAQVEPGVLITFVSLTRGGNDLKRIRFSRDTFNKWQAQRWWAENYDKVMELYNVQRLNRLAFPLPTPARSEDESSKRESIADSPVTPPLTKEQLSRNLYRPTGTGMGYSSSDSFDQHSMQSKHYQYDLSGMNSTPKVSTISAAKTDISSMAASIRSSSSREADRSGDLSMSNASEPDSEWVEEDEPGVYITIRSLPGGKREIRRVRFSREKFGEVHARLWWEENRARVHEQYL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08714 360 MobiDBLite consensus disorder prediction 192 243 - -
Vifa1g08714 360 MobiDBLite consensus disorder prediction 277 310 - -
Vifa1g08714 360 ProSiteProfiles BRX domain profile. 125 180 IPR013591 -
Vifa1g08714 360 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 360 IPR044532 -
Vifa1g08714 360 MobiDBLite consensus disorder prediction 277 303 - -
Vifa1g08714 360 Pfam Transcription factor regulating root and shoot growth via Pin3 305 359 IPR013591 -
Vifa1g08714 360 Pfam Transcription factor regulating root and shoot growth via Pin3 125 179 IPR013591 -
Vifa1g08714 360 MobiDBLite consensus disorder prediction 96 111 - -
Vifa1g08714 360 MobiDBLite consensus disorder prediction 1 28 - -
Vifa1g08714 360 Pfam Transcription factor BRX N-terminal domain 33 57 IPR027988 -
Vifa1g08714 360 ProSiteProfiles BRX domain profile. 305 360 IPR013591 -
Vifa1g08714 360 MobiDBLite consensus disorder prediction 92 112 - -
Vifa1g08714 360 MobiDBLite consensus disorder prediction 213 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08714 Vifa-Chr1 1375122407 1375127900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08714 1 360 Major Intrinsic Protein MIP AT1G31880 44.267 3.28e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08714 - - mnt:21409969 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08714 1 1375122407 1375127900 Vifa1g08714 1 1375122407 1375127900 ECH